8SPU
Structure of ESRRB nucleosome bound OCT4 at site c
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth L] | SCOP2B Superfamily | lambda C1 repressor DNA-binding domain-like | 8094725 | 3000119 | SCOP2B (2021-05-27) |
D [auth E] | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2021-05-27) |
H [auth A] | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2021-05-27) |
E [auth F] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2021-05-27) |
I [auth B] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2021-05-27) |
F [auth G] | SCOP2B Superfamily | Core histone-like | 8099192 | 3001387 | SCOP2B (2021-05-27) |
J [auth C] | SCOP2B Superfamily | Core histone-like | 8099192 | 3001387 | SCOP2B (2021-05-27) |
G [auth H] | SCOP2B Superfamily | Core histone-like | 8066283 | 3001387 | SCOP2B (2021-05-27) |
K [auth D] | SCOP2B Superfamily | Core histone-like | 8066283 | 3001387 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth L] | PF00157 | e8spuL1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: PF00157 | ECOD (1.6) |
D [auth E] | PF00125 | e8spuE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H [auth A] | PF00125 | e8spuA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E [auth F] | PF15511 | e8spuF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
I [auth B] | PF15511 | e8spuB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F [auth G] | PF00125,PF16211 | e8spuG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
J [auth C] | PF00125,PF16211 | e8spuC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G [auth H] | PF00125 | e8spuH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
K [auth D] | PF00125 | e8spuD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
L [auth N] | PF07686 | e8spuN2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
M [auth K] | PF07686 | e8spuK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth L] | PF00157 | Pou domain - N-terminal to homeobox domain (Pou) | Pou domain - N-terminal to homeobox domain | - | Domain |
E [auth F], I [auth B] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
F [auth G], J [auth C] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |