8SJD
Cryo-EM structure of the Hermes transposase bound to two right-ends of its DNA transposon.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Hermes dimerisation domain | 8038725 | 3002013 | SCOP2B (2021-05-27) |
A [auth C] | SCOP2B Superfamily | Ribonuclease H-like | 8038724 | 3000143 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | Hermes dimerisation domain | 8038725 | 3002013 | SCOP2B (2021-05-27) |
B [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8038724 | 3000143 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8038724 | 3000143 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Hermes dimerisation domain | 8038725 | 3002013 | SCOP2B (2021-05-27) |
D [auth A] | SCOP2B Superfamily | Hermes dimerisation domain | 8038725 | 3002013 | SCOP2B (2021-05-27) |
D [auth A] | SCOP2B Superfamily | Ribonuclease H-like | 8038724 | 3000143 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF10683 | e8sjdC2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
A [auth C] | PF05699 | e8sjdC1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
B [auth D] | PF10683 | e8sjdD1 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
B [auth D] | PF05699 | e8sjdD2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
C [auth B] | PF10683 | e8sjdB2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
C [auth B] | PF05699 | e8sjdB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
D [auth A] | PF10683 | e8sjdA2 | A: alpha duplicates or obligate multimers | X: Hermes dimerisation domain (From Topology) | H: Hermes dimerisation domain (From Topology) | T: Hermes dimerisation domain | F: PF10683 | ECOD (1.6) |
D [auth A] | PF05699 | e8sjdA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF05699 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D], C [auth B], D [auth A] | PF05699 | hAT family C-terminal dimerisation region (Dimer_Tnp_hAT) | hAT family C-terminal dimerisation region | This dimerisation region is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation region forms extremely stable dimers in vitro [1]. | Domain |