8RX0

(NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyVHL 8041313 3000841 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
G [auth N]SCOP2B SuperfamilyUbiquitin-like 8034470 3000157 SCOP2B (2022-06-29)
H [auth R]SCOP2B SuperfamilyRING/U-box like 8040866 3000160 SCOP2B (2022-06-29)
I [auth U]SCOP2B SuperfamilyUbiquitin-like 8043829 3000157 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00439Bromodomain (Bromodomain)BromodomainBromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3].Domain
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain
C [auth D]PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
D [auth C]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF00888Cullin family (Cullin)Cullin family- Repeat
F [auth G]PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain
G [auth N]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
H [auth R]PF12678RING-H2 zinc finger domain (zf-rbx1)RING-H2 zinc finger domainThere are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ...There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control [1].
Domain
I [auth U]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Isoform B of Bromodomain-containing protein 4
von Hippel-Lindau disease tumor suppressor
C [auth D]Elongin-C
D [auth C]Elongin-B
Cullin-2
F [auth G]Ubiquitin-conjugating enzyme E2 R1
G [auth N]NEDD8
H [auth R]E3 ubiquitin-protein ligase RBX1, N-terminally processed
I [auth U]Polyubiquitin-B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR043508Brdt, bromodomain, repeat IDomain
IPR027353NET domainDomain
IPR043509Brdt, bromodomain, repeat IIDomain
IPR018359Bromodomain, conserved siteConserved Site
IPR001487BromodomainDomain
IPR050935Bromodomain-containing chromatin readerFamily
IPR038336NET domain superfamilyHomologous Superfamily
IPR031354Bromodomain protein 4, C-terminalDomain
IPR036427Bromodomain-like superfamilyHomologous Superfamily
IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
IPR036208VHL superfamilyHomologous Superfamily
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily
C [auth D]IPR016073SKP1 component, POZ domainDomain
C [auth D]IPR001232S-phase kinase-associated protein 1-likeFamily
C [auth D]IPR039948Elongin-CFamily
C [auth D]IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
D [auth C]IPR000626Ubiquitin-like domainDomain
D [auth C]IPR039049Elongin BFamily
D [auth C]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR045093CullinFamily
IPR019559Cullin protein, neddylation domainDomain
IPR016158Cullin homology domainDomain
IPR016157Cullin, conserved siteConserved Site
IPR001373Cullin, N-terminalDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR036317Cullin homology domain superfamilyHomologous Superfamily
IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
F [auth G]IPR050113Ubiquitin-conjugating enzymeFamily
F [auth G]IPR000608Ubiquitin-conjugating enzyme E2Domain
F [auth G]IPR016135Ubiquitin-conjugating enzyme/RWD-likeHomologous Superfamily
F [auth G]IPR023313Ubiquitin-conjugating enzyme, active siteActive Site
G [auth N]IPR019954Ubiquitin conserved siteConserved Site
G [auth N]IPR000626Ubiquitin-like domainDomain
G [auth N]IPR019956Ubiquitin domainDomain
G [auth N]IPR050158Ubiquitin and ubiquitin-likeFamily
G [auth N]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
G [auth N]IPR038738Nedd8-like ubiquitinDomain
H [auth R]IPR051031RING-box E3 Ubiquitin LigaseFamily
H [auth R]IPR024766Zinc finger, RING-H2-typeDomain
H [auth R]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
H [auth R]IPR001841Zinc finger, RING-typeDomain
I [auth U]IPR019954Ubiquitin conserved siteConserved Site
I [auth U]IPR000626Ubiquitin-like domainDomain
I [auth U]IPR019956Ubiquitin domainDomain
I [auth U]IPR050158Ubiquitin and ubiquitin-likeFamily
I [auth U]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosO60885
PharosP40337
C [auth D]PharosQ15369
D [auth C]PharosQ15370
PharosQ13617
F [auth G]PharosP49427
G [auth N]PharosQ15843
H [auth R]PharosP62877
I [auth U]PharosP0CG48