8RGH

Structure of dynein-2 intermediate chain DYNC2I1 (WDR60) in complex with the dynein-2 heavy chain DYNC2H1.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth G]	SCOP2B Superfamily	Roadblock/LC7 domain-like	8033463	3001810	SCOP2B (2022-06-29)
F [auth H]	SCOP2B Superfamily	Roadblock/LC7 domain-like	8033463	3001810	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08385	Dynein heavy chain, N-terminal region 1 (DHC_N1)	Dynein heavy chain, N-terminal region 1	-	Family
E [auth G], F [auth H]	PF03259	Roadblock/LC7 domain (Robl_LC7)	Roadblock/LC7 domain	This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is pro ...	This family includes proteins that are about 100 amino acids long and have been shown to be related [3]. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions [2]. This family also includes Swiss:Q9Y2Q5 Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus Swiss:Q50883, a protein involved in gliding motility [4]. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Methylated-DNA--protein-cysteine methyltransferase,Cytoplasmic dynein 2 heavy chain 1	DNA binding binding organic cyclic compound binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA DNA binding binding organic cyclic compound binding nucleic acid binding transferase activity, transferring one-carbon groups transferase activity methyltransferase activity catalytic activity catalytic activity, acting on a protein S-methyltransferase activity protein methyltransferase activity methylated-DNA-[protein]-cysteine S-methyltransferase activity DNA-methyltransferase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid cation binding ion binding metal ion binding small molecule binding cytoskeletal motor activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding dynein light intermediate chain binding protein binding microtubule motor activity minus-end-directed microtubule motor activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides dynein intermediate chain binding	cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress cellular response to stimulus regulation of cellular process response to stimulus regulation of double-strand break repair positive regulation of biological process regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of DNA repair cellular response to stress response to stress regulation of response to stress positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process DNA repair double-strand break repair regulation of biological process positive regulation of nucleobase-containing compound metabolic process biological regulation primary metabolic process DNA metabolic process regulation of macromolecule metabolic process positive regulation of double-strand break repair nucleic acid metabolic process regulation of DNA repair positive regulation of DNA metabolic process regulation of response to stimulus DNA damage response metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death methylation DNA ligation DNA alkylation repair protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cilium-dependent cell motility microtubule-based movement microtubule-based process cilium movement involved in cell motility cilium movement cell motility cilium or flagellum-dependent cell motility developmental process dorsal/ventral pattern formation multicellular organism development multicellular organismal process anatomical structure development pattern specification process regionalization cellular developmental process cell differentiation in spinal cord nervous system development generation of neurons central nervous system neuron differentiation neurogenesis spinal cord development central nervous system development neuron differentiation cell differentiation ventral spinal cord development spinal cord motor neuron differentiation system development positive regulation of cell communication positive regulation of signal transduction signaling regulation of signal transduction cell communication positive regulation of smoothened signaling pathway signal transduction regulation of smoothened signaling pathway regulation of signaling cell surface receptor signaling pathway smoothened signaling pathway regulation of cell communication positive regulation of signaling organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process gene expression macromolecule biosynthetic process protein maturation biosynthetic process proteolysis protein processing protein metabolic process limb development appendage development embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development anatomical structure morphogenesis appendage morphogenesis limb morphogenesis plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization protein-containing complex localization cellular component organization organelle organization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport cellular component organization or biogenesis cilium organization intraciliary transport organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly cilium assembly non-motile cilium assembly cell projection assembly determination of bilateral symmetry determination of left/right symmetry left/right pattern formation specification of symmetry head development forebrain development animal organ development brain development heart development coronary vasculature development vasculature development circulatory system development blood vessel development kidney development renal system development Golgi organization endomembrane system organization	membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cell projection membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cell projection cilium plasma membrane bounded cell projection axoneme ciliary plasm cytoplasmic region plasma membrane bounded cell projection cytoplasm cytoskeleton intracellular non-membrane-bounded organelle cytoplasm non-membrane-bounded organelle apical part of cell extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle ciliary tip cell periphery plasma membrane Golgi apparatus endomembrane system 9+2 motile cilium motile cilium protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
B [auth C]	Cytoplasmic dynein 2 intermediate chain 1	protein binding binding dynein heavy chain binding dynein light chain binding	embryonic organ morphogenesis developmental process multicellular organismal process chordate embryonic development embryonic morphogenesis animal organ development embryo development multicellular organism development anatomical structure morphogenesis embryo development ending in birth or egg hatching skeletal system development anatomical structure development animal organ morphogenesis embryonic skeletal system development embryonic organ morphogenesis developmental process multicellular organismal process chordate embryonic development embryonic morphogenesis animal organ development embryo development multicellular organism development anatomical structure morphogenesis embryo development ending in birth or egg hatching skeletal system development anatomical structure development animal organ morphogenesis embryonic skeletal system development skeletal system morphogenesis embryonic organ development embryonic skeletal system morphogenesis system development cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport intraciliary retrograde transport establishment of localization protein-containing complex localization cellular component organization localization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cellular component organization or biogenesis cilium organization intraciliary transport organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly cilium assembly cell projection assembly	membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle pericentriolar material ciliary tip cytoplasm ciliary base extracellular region extracellular space protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex
D [auth E]	Cytoplasmic dynein 2 light intermediate chain 1	protein binding binding dynein heavy chain binding	developmental process multicellular organism development multicellular organismal process determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry regulation of cellular process regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly developmental process multicellular organism development multicellular organismal process determination of bilateral symmetry anatomical structure development pattern specification process determination of left/right symmetry left/right pattern formation regionalization specification of symmetry regulation of cellular process regulation of cellular component organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization regulation of biological process organelle assembly plasma membrane bounded cell projection organization regulation of cell projection organization regulation of cell projection assembly biological regulation regulation of cellular component biogenesis regulation of organelle organization regulation of plasma membrane bounded cell projection assembly regulation of cilium assembly organelle organization regulation of organelle assembly cellular process cell projection assembly regulation of plasma membrane bounded cell projection organization cellular localization transport localization establishment of localization in cell transport along microtubule intraciliary transport intraciliary transport involved in cilium assembly intracellular transport establishment of localization protein-containing complex localization microtubule-based transport cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process intraciliary retrograde transport	membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle cytoplasm non-membrane-bounded organelle apical part of cell Golgi apparatus intracellular membrane-bounded organelle endomembrane system ciliary transition zone centrosome microtubule organizing center microtubule cytoskeleton cytosol ciliary tip motile cilium protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex ciliary basal body polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
E [auth G], F [auth H]	Dynein light chain roadblock-type 1	microtubule motor activity cytoskeletal motor activity ATP-dependent activity protein binding binding dynein intermediate chain binding	microtubule-based movement microtubule-based process cellular process response to light stimulus behavior multicellular organismal process response to stimulus visual behavior response to radiation response to abiotic stimulus	membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection membrane intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection membrane intracellular organelle centrosome microtubule organizing center intracellular anatomical structure cytoskeleton intracellular non-membrane-bounded organelle microtubule cytoskeleton non-membrane-bounded organelle ciliary tip cytoplasm protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
C [auth D]	Cytoplasmic dynein 2 intermediate chain 2	protein binding binding dynein heavy chain binding dynein light chain binding	cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport establishment of localization protein-containing complex localization cellular component organization localization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cellular localization plasma membrane bounded cell projection organization cell projection organization transport intracellular transport establishment of localization protein-containing complex localization cellular component organization localization organelle organization establishment of localization in cell microtubule-based transport cellular process transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cellular component organization or biogenesis cilium organization intraciliary transport intraciliary retrograde transport organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly cilium assembly cell projection assembly	membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection intracellular anatomical structure axoneme ciliary plasm cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton intracellular non-membrane-bounded organelle cytoplasm non-membrane-bounded organelle centrosome microtubule organizing center microtubule cytoskeleton centriole cytosol ciliary tip protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex microtubule associated complex ciliary basal body actin-based cell projection filopodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008332	Methylguanine DNA methyltransferase, ribonuclease-like domain	Domain
A	IPR036217	Methylated DNA-protein cysteine methyltransferase, DNA binding domain	Homologous Superfamily
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR036631	Methylated DNA-protein cysteine methyltransferase domain superfamily	Homologous Superfamily
A	IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding	Domain
A	IPR001497	Methylated-DNA-[protein]-cysteine S-methyltransferase, active site	Active Site
A	IPR026983	Dynein heavy chain	Family
A	IPR013602	Dynein heavy chain, linker	Domain
A	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
A	IPR041228	Dynein heavy chain, C-terminal domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR041658	Dynein heavy chain AAA lid domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
A	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
A	IPR042219	Dynein heavy chain AAA lid domain superfamily	Homologous Superfamily
A	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
A	IPR013594	Dynein heavy chain, tail	Domain
A	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
A	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
A	IPR049400	Cytoplasmic dynein 2 heavy chain 1, AAA+ ATPase domain	Domain
A	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
A	IPR004273	Dynein heavy chain region D6 P-loop domain	Domain
A	IPR024317	Dynein heavy chain, AAA module D4	Domain
B [auth C]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
B [auth C]	IPR001680	WD40 repeat	Repeat
B [auth C]	IPR042505	Cytoplasmic dynein 2 intermediate chain 1	Family
B [auth C]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
D [auth E]	IPR022780	Dynein family light intermediate chain	Family
D [auth E]	IPR040045	Cytoplasmic dynein 2 light intermediate chain 1	Family
D [auth E]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
E [auth G], F [auth H]	IPR016561	Dynein light chain roadblock-type 1/2	Family
E [auth G], F [auth H]	IPR004942	Roadblock/LAMTOR2 domain	Domain
C [auth D]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C [auth D]	IPR001680	WD40 repeat	Repeat
C [auth D]	IPR050687	Dynein Intermediate Chain	Family
C [auth D]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q8NCM8	malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm peripheral neuropathy anorexia nervosa bone disease spinal cord disease malignant glioma giant cell glioblastoma esophageal squamous cell carcinoma glioblastoma Necrosis gliosarcoma mixed glioma familial melanoma leukemia malignant mesothelioma oral cavity neoplasm peripheral neuropathy anorexia nervosa bone disease spinal cord disease osteosarcoma precancerous condition astrocytic tumor brain cancer head and neck squamous cell carcinoma oligodendroglioma peripheral nervous system disease brain disease tuberculosis cancer glioma Jeune syndrome short rib-polydactyly syndrome short rib-polydactyly syndrome, Verma-Naumoff type breast cancer Saldino-Noonan syndrome asphyxiating thoracic dystrophy 3 breast carcinoma polydactyly osteogenesis imperfecta pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia short-rib thoracic dysplasia 6 with or without polydactyly cystic fibrosis invasive ductal breast carcinoma myocardial infarction osteosarcoma sinusitis atypical teratoid rhabdoid tumor heart disease malignant ependymoma nasopharyngeal carcinoma ovarian cancer psoriasis tuberculosis ciliopathy intellectual disability lung adenocarcinoma malignant mesothelioma
B [auth C]	Pharos: Q8WVS4	Jeune syndrome short-rib thoracic dysplasia 8 with or without polydactyly short rib-polydactyly syndrome short rib-polydactyly syndrome, Verma-Naumoff type asphyxiating thoracic dystrophy 3 intellectual disability malignant ependymoma swine influenza Ciliopathies polydactyly degenerative myopia
D [auth E]	Pharos: Q8TCX1	Jeune syndrome short-rib thoracic dysplasia 15 with polydactyly Ellis-van Creveld syndrome short rib-polydactyly syndrome cholelithiasis gallbladder disease osteosarcoma Pick disease psoriasis Ciliopathies heart disease ovarian cancer polydactyly sinusitis interstitial cystitis Jeune syndrome short-rib thoracic dysplasia 15 with polydactyly Ellis-van Creveld syndrome short rib-polydactyly syndrome cholelithiasis gallbladder disease osteosarcoma Pick disease psoriasis Ciliopathies heart disease ovarian cancer polydactyly sinusitis interstitial cystitis malignant ependymoma pancreatitis progressive supranuclear palsy
E [auth G], F [auth H]	Pharos: Q9NP97	melanoma pancreatic intraductal papillary-mucinous neoplasm osteosarcoma plasma cell myeloma ovarian cancer psoriasis
C [auth D]	Pharos: Q96EX3	Jeune syndrome short-rib thoracic dysplasia 11 with or without polydactyly short rib-polydactyly syndrome short rib-polydactyly syndrome, Verma-Naumoff type allergic rhinitis atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma osteosarcoma primitive neuroectodermal tumor asphyxiating thoracic dystrophy 3 Ciliopathies intellectual disability large cell medulloblastoma malignant glioma Jeune syndrome short-rib thoracic dysplasia 11 with or without polydactyly short rib-polydactyly syndrome short rib-polydactyly syndrome, Verma-Naumoff type allergic rhinitis atypical teratoid rhabdoid tumor glioblastoma malignant ependymoma osteosarcoma primitive neuroectodermal tumor asphyxiating thoracic dystrophy 3 Ciliopathies intellectual disability large cell medulloblastoma malignant glioma ovarian cancer atopic eczema ductal breast carcinoma in situ invasive ductal breast carcinoma medulloblastoma polydactyly