8PV2

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth CK]SCOP2B Superfamily50S Ribosomal protein L14-like 8053081 3000433 SCOP2B (2021-05-27)
H [auth CN]SCOP2B SuperfamilyPentein 8084662 3000640 SCOP2B (2021-05-27)
S [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8077111 3001146 SCOP2B (2021-05-27)
Y [auth LJ]SCOP2B SuperfamilyRL5-like 8077505 3001709 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth CN]PF01912e8pv2CN1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
K [auth Cb]PF12171e8pv2Cb1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: PF12171ECOD (1.6)
O [auth Ch]PF00400e8pv2Ch2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
O [auth Ch]F_UNCLASSIFIEDe8pv2Ch1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: F_UNCLASSIFIEDECOD (1.6)
Q [auth LA]PF00181e8pv2LA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
Q [auth LA]PF03947e8pv2LA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
R [auth LB]PF00297e8pv2LB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
S [auth LC]PF00573e8pv2LC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
S [auth LC]PF14374e8pv2LC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
U [auth LE]PF01159e8pv2LE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
EB [auth CM]PF00327e8pv2CM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
V [auth LF]PF00327,PF08079e8pv2LF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
W [auth LG]PF01248e8pv2LG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
X [auth LH]PF00347e8pv2LH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
Y [auth LJ]PF00281,PF00673e8pv2LJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
Z [auth LK]PF00298e8pv2LK1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
Z [auth LK]PF03946e8pv2LK2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
AA [auth LL]PF01294e8pv2LL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
CA [auth LN]PF00827e8pv2LN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
DA [auth LO]PF00572e8pv2LO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
EA [auth LP]PF00237e8pv2LP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
HA [auth LS]F_UNCLASSIFIEDe8pv2LS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
HA [auth LS]PF01775e8pv2LS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
KA [auth LV]PF00238e8pv2LV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
MA [auth LY]PF16906e8pv2LY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
OA [auth La]PF00828e8pv2La1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
PA [auth Lc]PF01248e8pv2Lc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
QA [auth Ld]PF01198e8pv2Ld1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
RA [auth Le]PF01655e8pv2Le1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
SA [auth Lf]PF01247e8pv2Lf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
UA [auth Lh]PF00831e8pv2Lh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
VA [auth Li]PF01158e8pv2Li1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
XA [auth Lk]PF01781e8pv2Lk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
AB [auth Lq]PF01778e8pv2Lq1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
CB [auth CD]PF00400e8pv2CD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
CB [auth CD]PF08154e8pv2CD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF08154ECOD (1.6)
T [auth LD]PF14204,PF17144e8pv2LD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
BA [auth LM]PF01929e8pv2LM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01929ECOD (1.6)
FA [auth LQ]PF17135e8pv2LQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
GA [auth LR]PF01280e8pv2LR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
GA [auth LR]PF01280e8pv2LR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
IA [auth LT]PF01157e8pv2LT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
JA [auth LU]PF01776e8pv2LU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
LA [auth LX]PF00276,PF03939e8pv2LX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
D [auth CF]PF00466e8pv2CF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
D [auth CF]PF17777e8pv2CF2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
NA [auth LZ]PF01777e8pv2LZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
TA [auth Lg]PF01199e8pv2Lg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
WA [auth Lj]PF01907e8pv2Lj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
YA [auth Ll]PF00832e8pv2Ll1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
ZA [auth Lp]PF01780e8pv2Lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth CK]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
G [auth CL]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
H [auth CN]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
Q [auth LA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
S [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
S [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
U [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
U [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
EB [auth CM],
V [auth LF]
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
EB [auth CM],
V [auth LF]
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
EB [auth CM],
V [auth LF]
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
W [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth LH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
Y [auth LJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
Y [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
Z [auth LK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
Z [auth LK]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
Z [auth LK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
AA [auth LL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
CA [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
DA [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
EA [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
EA [auth LP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
HA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
KA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
MA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
MA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
BB [auth CC]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
CB [auth CD]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
CB [auth CD]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].Domain
CB [auth CD]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
CB [auth CD]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
J [auth CQ]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
T [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
T [auth LD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
T [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
BA [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
FA [auth LQ]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
FA [auth LQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
GA [auth LR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
JA [auth LU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
LA [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
D [auth CF]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
D [auth CF]PF04427Brix domain (Brix)Brix domain- Domain
D [auth CF]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
NA [auth LZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
E [auth CH]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
E [auth CH]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
E [auth CH]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
E [auth CH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
DB [auth CJ]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
DB [auth CJ]PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth CK]Ribosome biogenesis protein NSA2 homolog-
G [auth CL]Putative GTP binding protein -
H [auth CN]Eukaryotic translation initiation factor 6
K [auth Cb]Zinc finger domain-containing protein
L [auth Cd]Nucleolar GTP-binding protein 2 -
N [auth Cg]Ribosome biogenesis regulatory protein-
O [auth Ch]Ribosome assembly protein 4-
P [auth Cz]rRNA-processing protein-
Q [auth LA]60S ribosomal protein L2-like protein
R [auth LB]60S ribosomal protein L3-like protein
S [auth LC]60S ribosomal protein L4-like protein
U [auth LE]60S ribosomal protein L6
EB [auth CM],
V [auth LF]
60S ribosomal protein l7-like protein
W [auth LG]60S ribosomal protein L8
X [auth LH]60S ribosomal protein l9-like protein---
Y [auth LJ]Putative ribosomal protein
Z [auth LK]60S ribosomal protein L12-like protein
AA [auth LL]60S ribosomal protein L13
CA [auth LN]Ribosomal protein L15
DA [auth LO]60S ribosomal protein L16-like protein
EA [auth LP]60S ribosomal protein l17-like protein
HA [auth LS]60S ribosomal protein L20
KA [auth LV]60S ribosomal protein l23-like protein
MA [auth LY]60S ribosomal protein L26-like protein
OA [auth La]60S ribosomal protein L28-like protein---
PA [auth Lc]60S ribosomal protein l30-like protein -
QA [auth Ld]Putative 60S ribosomal protein
RA [auth Le]60S ribosomal protein L32-like protein
SA [auth Lf]60S ribosomal protein l33-like protein
UA [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
VA [auth Li]60S ribosomal protein L36
XA [auth Lk]60S ribosomal protein L38-like protein
AB [auth Lq]Putative 60S ribosomal protein
BB [auth CC]Ribosome biogenesis protein ERB1
CB [auth CD]Ribosome biogenesis protein YTM1
A [auth C1]26S rRNA---
J [auth CQ]Ribosome biogenesis protein RLP24-
M [auth Cf]Ribosome production factor 2 homolog
B [auth C2]5.8S rRNA---
T [auth LD]60S ribosomal protein l5-like protein
BA [auth LM]60S ribosomal protein L14-like protein
C [auth C4]5S rRNA---
FA [auth LQ]Ribosomal protein L18-like protein
GA [auth LR]Ribosomal protein L19
IA [auth LT]60S ribosomal protein l21-like protein
JA [auth LU]60S ribosomal protein L22-like protein
LA [auth LX]60S ribosomal protein L25-like protein
D [auth CF]Large ribosomal subunit protein uL10
NA [auth LZ]60S ribosomal protein L27
TA [auth Lg]Ribosomal protein l34-like protein
WA [auth Lj]Ribosomal protein L37
E [auth CH]Nucleolar GTP-binding protein 1
YA [auth Ll]Ribosomal protein eL39
ZA [auth Lp]60S ribosomal protein L43-like protein
DB [auth CJ]Pescadillo homolog
I [auth CO]DUF2423 domain-containing protein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth CK]IPR039411Ribosomal biogenesis NSA2 familyFamily
F [auth CK]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
G [auth CL]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
G [auth CL]IPR006073GTP binding domainDomain
G [auth CL]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
G [auth CL]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
G [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth CN]IPR002769Translation initiation factor IF6Family
K [auth Cb]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
K [auth Cb]IPR013087Zinc finger C2H2-typeDomain
K [auth Cb]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
K [auth Cb]IPR022755Zinc finger, double-stranded RNA bindingDomain
L [auth Cd]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
L [auth Cd]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
L [auth Cd]IPR006073GTP binding domainDomain
L [auth Cd]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
L [auth Cd]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
L [auth Cd]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth Cg]IPR007023Ribosomal biogenesis regulatory proteinFamily
O [auth Ch]IPR001680WD40 repeatRepeat
O [auth Ch]IPR019775WD40 repeat, conserved siteConserved Site
O [auth Ch]IPR020472G-protein beta WD-40 repeatRepeat
O [auth Ch]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
O [auth Ch]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth Cz]IPR005579Cgr1-likeFamily
Q [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
Q [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
Q [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
Q [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
Q [auth LA]IPR002171Large ribosomal subunit protein uL2Family
R [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
R [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
R [auth LB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
R [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
R [auth LB]IPR000597Large ribosomal subunit protein uL3Family
S [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
S [auth LC]IPR002136Large ribosomal subunit protein uL4Family
S [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
S [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
S [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
U [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
U [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
U [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth LE]IPR000915Large ribosomal subunit protein eL6Family
EB [auth CM],
V [auth LF]
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
EB [auth CM],
V [auth LF]
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
EB [auth CM],
V [auth LF]
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
EB [auth CM],
V [auth LF]
IPR039699Large ribosomal subunit protein uL30Family
EB [auth CM],
V [auth LF]
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
EB [auth CM],
V [auth LF]
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth LG]IPR001921Large ribosomal subunit protein eL8Family
W [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
W [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
W [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
W [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
Y [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
Y [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
Y [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
Y [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
Y [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
Z [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
Z [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Z [auth LK]IPR000911Ribosomal protein uL11Family
Z [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Z [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Z [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
AA [auth LL]IPR001380Large ribosomal subunit protein eL13Family
AA [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
CA [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
CA [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
CA [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
CA [auth LN]IPR000439Large ribosomal subunit protein eL15Family
DA [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
DA [auth LO]IPR005822Large ribosomal subunit protein uL13Family
DA [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
DA [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
EA [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
EA [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
EA [auth LP]IPR001063Large ribosomal subunit protein uL22Family
EA [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
HA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
HA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
HA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
KA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
KA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
KA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
MA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
MA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth LY]IPR005824KOWDomain
MA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
PA [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
PA [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
PA [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
PA [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
PA [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
QA [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
QA [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
QA [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
RA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
RA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
SA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
SA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
SA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
SA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
UA [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
UA [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
UA [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
UA [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
UA [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
VA [auth Li]IPR000509Large ribosomal subunit protein eL36Family
VA [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
XA [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
XA [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
AB [auth Lq]IPR029004Ribosomal eL28/Mak16Domain
AB [auth Lq]IPR002672Large ribosomal subunit protein eL28Family
BB [auth CC]IPR001680WD40 repeatRepeat
BB [auth CC]IPR019775WD40 repeat, conserved siteConserved Site
BB [auth CC]IPR012953BOP1, N-terminal domainDomain
BB [auth CC]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BB [auth CC]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
BB [auth CC]IPR028598WD repeat BOP1/Erb1Family
CB [auth CD]IPR019775WD40 repeat, conserved siteConserved Site
CB [auth CD]IPR012972NLEDomain
CB [auth CD]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
CB [auth CD]IPR001680WD40 repeatRepeat
CB [auth CD]IPR028599WD repeat WDR12/Ytm1Family
CB [auth CD]IPR020472G-protein beta WD-40 repeatRepeat
CB [auth CD]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
J [auth CQ]IPR011017TRASH domainDomain
J [auth CQ]IPR000988Large ribosomal subunit protein eL24-relatedFamily
J [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
M [auth Cf]IPR039770Ribosome biogenesis protein Rpf2Family
M [auth Cf]IPR007109Brix domainDomain
T [auth LD]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
T [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
BA [auth LM]IPR039660Large ribosomal subunit protein eL14Family
BA [auth LM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
BA [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
BA [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
BA [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FA [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
FA [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
FA [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
GA [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
GA [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
GA [auth LR]IPR034085TOG domainDomain
GA [auth LR]IPR019399Parkin co-regulated proteinFamily
GA [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
GA [auth LR]IPR021133HEAT, type 2Repeat
GA [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
GA [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
GA [auth LR]IPR022716Gcn1, N-terminalDomain
GA [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
GA [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
IA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
IA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
IA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
IA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JA [auth LU]IPR002671Large ribosomal subunit protein eL22Family
JA [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
LA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
LA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
D [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
D [auth CF]IPR001790Large ribosomal subunit protein uL10Family
D [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
D [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
D [auth CF]IPR033867Ribosome assembly factor Mrt4Family
NA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
NA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
NA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
NA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
TA [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
TA [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
WA [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
WA [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
WA [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
E [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
E [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
E [auth CH]IPR012973NOG, C-terminalDomain
E [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
E [auth CH]IPR041623NOG1, N-terminal helical domainDomain
E [auth CH]IPR006073GTP binding domainDomain
E [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
YA [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
YA [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
ZA [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
ZA [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
ZA [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DB [auth CJ]IPR001357BRCT domainDomain
DB [auth CJ]IPR010613PescadilloFamily
DB [auth CJ]IPR036420BRCT domain superfamilyHomologous Superfamily
I [auth CO]IPR019434Domain of unknown function DUF2423Domain