8PV1

Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth CK]SCOP2B Superfamily50S Ribosomal protein L14-like 8053081 3000433 SCOP2B (2021-05-27)
M [auth CN]SCOP2B SuperfamilyPentein 8084662 3000640 SCOP2B (2021-05-27)
Y [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8077111 3001146 SCOP2B (2021-05-27)
EA [auth LJ]SCOP2B SuperfamilyRL5-like 8077505 3001709 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth CF]PF00466e8pv1CF2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
F [auth CF]PF17777e8pv1CF1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
BA [auth LF]PF00327,PF08079e8pv1LF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
L [auth CM]PF00327,PF08079e8pv1CM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
M [auth CN]PF01912e8pv1CN1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
P [auth Cb]PF12171e8pv1Cb1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: PF12171ECOD (1.6)
U [auth Ch]PF00400e8pv1Ch2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
U [auth Ch]F_UNCLASSIFIEDe8pv1Ch1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: F_UNCLASSIFIEDECOD (1.6)
W [auth LA]PF00181e8pv1LA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
W [auth LA]PF03947e8pv1LA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
X [auth LB]PF00297e8pv1LB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
Y [auth LC]PF00573e8pv1LC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
Y [auth LC]PF14374e8pv1LC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
Z [auth LD]PF14204,PF17144e8pv1LD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
AA [auth LE]PF01159e8pv1LE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)
CA [auth LG]PF01248e8pv1LG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
DA [auth LH]PF00347e8pv1LH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
EA [auth LJ]PF00281,PF00673e8pv1LJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
FA [auth LK]PF00298e8pv1LK1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
FA [auth LK]PF03946e8pv1LK2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
GA [auth LL]PF01294e8pv1LL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
HA [auth LM]PF01929e8pv1LM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01929ECOD (1.6)
IA [auth LN]PF00827e8pv1LN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
JA [auth LO]PF00572e8pv1LO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
LA [auth LQ]PF17135e8pv1LQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
MA [auth LR]PF01280e8pv1LR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
MA [auth LR]PF01280e8pv1LR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
NA [auth LS]F_UNCLASSIFIEDe8pv1LS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
NA [auth LS]PF01775e8pv1LS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
OA [auth LT]PF01157e8pv1LT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
PA [auth LU]PF01776e8pv1LU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
QA [auth LV]PF00238e8pv1LV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
RA [auth LX]PF00276,PF03939e8pv1LX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
SA [auth LY]PF16906e8pv1LY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
TA [auth LZ]PF01777e8pv1LZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
UA [auth La]PF00828e8pv1La1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
VA [auth Lc]PF01248e8pv1Lc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
WA [auth Ld]PF01198e8pv1Ld1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
XA [auth Le]PF01655e8pv1Le1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
YA [auth Lf]PF01247e8pv1Lf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
ZA [auth Lg]PF01199e8pv1Lg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
AB [auth Lh]PF00831e8pv1Lh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
BB [auth Li]PF01158e8pv1Li1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
CB [auth Lj]PF01907e8pv1Lj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
DB [auth Lk]PF01781e8pv1Lk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
EB [auth Ll]PF00832e8pv1Ll1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
FB [auth Lp]PF01780e8pv1Lp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
GB [auth Lq]PF01778e8pv1Lq1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
KA [auth LP]PF00237e8pv1LP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth CB]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
E [auth CB]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
F [auth CF]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
F [auth CF]PF04427Brix domain (Brix)Brix domain- Domain
F [auth CF]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
G [auth CH]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
G [auth CH]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
G [auth CH]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
G [auth CH]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
H [auth CI]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
I [auth CJ]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
I [auth CJ]PF00533BRCA1 C Terminus (BRCT) domain (BRCT)BRCA1 C Terminus (BRCT) domain- Family
J [auth CK]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
K [auth CL]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
BA [auth LF],
L [auth CM]
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
BA [auth LF],
L [auth CM]
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
BA [auth LF],
L [auth CM]
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
M [auth CN]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
O [auth CQ]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
W [auth LA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
Y [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
Y [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Z [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
Z [auth LD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
Z [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
AA [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
AA [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
CA [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
DA [auth LH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
EA [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
EA [auth LJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
EA [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
FA [auth LK]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
FA [auth LK]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
FA [auth LK]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
GA [auth LL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
HA [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
IA [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
JA [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
LA [auth LQ]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
LA [auth LQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
MA [auth LR]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
NA [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
PA [auth LU]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
QA [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
RA [auth LX]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
RA [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
SA [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
SA [auth LY]PF00467KOW motif (KOW)KOW motif- Family
TA [auth LZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
KA [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
KA [auth LP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C1]26S rRNA---
B [auth C2]5.8S rRNA---
C [auth C3]ITS2---
D [auth C4]5S rRNA---
E [auth CB]Utp30
F [auth CF]Large ribosomal subunit protein uL10
G [auth CH]Nucleolar GTP-binding protein 1
H [auth CI]Putative RNA-binding protein
I [auth CJ]Pescadillo homolog
J [auth CK]Ribosome biogenesis protein NSA2 homolog-
K [auth CL]Putative GTP binding protein -
BA [auth LF],
L [auth CM]
60S ribosomal protein l7-like protein
M [auth CN]Eukaryotic translation initiation factor 6
N [auth CO]DUF2423 domain-containing protein- -
O [auth CQ]Ribosome biogenesis protein RLP24-
P [auth Cb]Zinc finger domain-containing protein
Q [auth Cd]Nucleolar GTP-binding protein 2 -
R [auth Ce]Ribosome biogenesis protein NOP53
S [auth Cf]Ribosome production factor 2 homolog
T [auth Cg]Ribosome biogenesis regulatory protein-
U [auth Ch]Ribosome assembly protein 4-
V [auth Cz]rRNA-processing protein-
W [auth LA]60S ribosomal protein L2-like protein
X [auth LB]60S ribosomal protein L3-like protein
Y [auth LC]60S ribosomal protein L4-like protein
Z [auth LD]60S ribosomal protein l5-like protein
AA [auth LE]60S ribosomal protein L6
CA [auth LG]60S ribosomal protein L8
DA [auth LH]60S ribosomal protein l9-like protein---
EA [auth LJ]Putative ribosomal protein
FA [auth LK]60S ribosomal protein L12-like protein
GA [auth LL]60S ribosomal protein L13
HA [auth LM]60S ribosomal protein L14-like protein
IA [auth LN]Ribosomal protein L15
JA [auth LO]60S ribosomal protein L16-like protein
LA [auth LQ]Ribosomal protein L18-like protein
MA [auth LR]Ribosomal protein L19
NA [auth LS]60S ribosomal protein L20
OA [auth LT]60S ribosomal protein l21-like protein
PA [auth LU]60S ribosomal protein L22-like protein
QA [auth LV]60S ribosomal protein l23-like protein
RA [auth LX]60S ribosomal protein L25-like protein
SA [auth LY]60S ribosomal protein L26-like protein
TA [auth LZ]60S ribosomal protein L27
UA [auth La]60S ribosomal protein L28-like protein---
VA [auth Lc]60S ribosomal protein l30-like protein -
WA [auth Ld]Putative 60S ribosomal protein
XA [auth Le]60S ribosomal protein L32-like protein
YA [auth Lf]60S ribosomal protein l33-like protein
ZA [auth Lg]Ribosomal protein l34-like protein
AB [auth Lh]dolichyl-diphosphooligosaccharide--protein glycotransferase
BB [auth Li]60S ribosomal protein L36
CB [auth Lj]Ribosomal protein L37
DB [auth Lk]60S ribosomal protein L38-like protein
EB [auth Ll]Ribosomal protein eL39
FB [auth Lp]60S ribosomal protein L43-like protein
GB [auth Lq]Putative 60S ribosomal protein
KA [auth LP]60S ribosomal protein l17-like protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth CB]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
E [auth CB]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
E [auth CB]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
F [auth CF]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
F [auth CF]IPR001790Large ribosomal subunit protein uL10Family
F [auth CF]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
F [auth CF]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
F [auth CF]IPR033867Ribosome assembly factor Mrt4Family
G [auth CH]IPR024926Nucleolar GTP-binding protein 1Family
G [auth CH]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
G [auth CH]IPR012973NOG, C-terminalDomain
G [auth CH]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
G [auth CH]IPR041623NOG1, N-terminal helical domainDomain
G [auth CH]IPR006073GTP binding domainDomain
G [auth CH]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth CI]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
H [auth CI]IPR000504RNA recognition motif domainDomain
H [auth CI]IPR035979RNA-binding domain superfamilyHomologous Superfamily
I [auth CJ]IPR001357BRCT domainDomain
I [auth CJ]IPR010613PescadilloFamily
I [auth CJ]IPR036420BRCT domain superfamilyHomologous Superfamily
J [auth CK]IPR039411Ribosomal biogenesis NSA2 familyFamily
J [auth CK]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
K [auth CL]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
K [auth CL]IPR006073GTP binding domainDomain
K [auth CL]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
K [auth CL]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
K [auth CL]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
BA [auth LF],
L [auth CM]
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
BA [auth LF],
L [auth CM]
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
BA [auth LF],
L [auth CM]
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
BA [auth LF],
L [auth CM]
IPR039699Large ribosomal subunit protein uL30Family
BA [auth LF],
L [auth CM]
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
BA [auth LF],
L [auth CM]
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth CN]IPR002769Translation initiation factor IF6Family
N [auth CO]IPR019434Domain of unknown function DUF2423Domain
O [auth CQ]IPR011017TRASH domainDomain
O [auth CQ]IPR000988Large ribosomal subunit protein eL24-relatedFamily
O [auth CQ]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
P [auth Cb]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
P [auth Cb]IPR013087Zinc finger C2H2-typeDomain
P [auth Cb]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
P [auth Cb]IPR022755Zinc finger, double-stranded RNA bindingDomain
Q [auth Cd]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
Q [auth Cd]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
Q [auth Cd]IPR006073GTP binding domainDomain
Q [auth Cd]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
Q [auth Cd]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
Q [auth Cd]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
R [auth Ce]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
S [auth Cf]IPR039770Ribosome biogenesis protein Rpf2Family
S [auth Cf]IPR007109Brix domainDomain
T [auth Cg]IPR007023Ribosomal biogenesis regulatory proteinFamily
U [auth Ch]IPR001680WD40 repeatRepeat
U [auth Ch]IPR019775WD40 repeat, conserved siteConserved Site
U [auth Ch]IPR020472G-protein beta WD-40 repeatRepeat
U [auth Ch]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
U [auth Ch]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
V [auth Cz]IPR005579Cgr1-likeFamily
W [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
W [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
W [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
W [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
W [auth LA]IPR002171Large ribosomal subunit protein uL2Family
X [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
X [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
X [auth LB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
X [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
X [auth LB]IPR000597Large ribosomal subunit protein uL3Family
Y [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
Y [auth LC]IPR002136Large ribosomal subunit protein uL4Family
Y [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
Y [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
Y [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Z [auth LD]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
Z [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
AA [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
AA [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
AA [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth LE]IPR000915Large ribosomal subunit protein eL6Family
CA [auth LG]IPR001921Large ribosomal subunit protein eL8Family
CA [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
CA [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
CA [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
CA [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
EA [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EA [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EA [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EA [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EA [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
FA [auth LK]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
FA [auth LK]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
FA [auth LK]IPR000911Ribosomal protein uL11Family
FA [auth LK]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
FA [auth LK]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
FA [auth LK]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
GA [auth LL]IPR001380Large ribosomal subunit protein eL13Family
GA [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
HA [auth LM]IPR039660Large ribosomal subunit protein eL14Family
HA [auth LM]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
HA [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
HA [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IA [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
IA [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
IA [auth LN]IPR000439Large ribosomal subunit protein eL15Family
JA [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
JA [auth LO]IPR005822Large ribosomal subunit protein uL13Family
JA [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
JA [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
LA [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
LA [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
LA [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
LA [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MA [auth LR]IPR016024Armadillo-type foldHomologous Superfamily
MA [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
MA [auth LR]IPR004155PBS lyase HEAT-like repeatRepeat
MA [auth LR]IPR034085TOG domainDomain
MA [auth LR]IPR019399Parkin co-regulated proteinFamily
MA [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
MA [auth LR]IPR021133HEAT, type 2Repeat
MA [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
MA [auth LR]IPR011989Armadillo-like helicalHomologous Superfamily
MA [auth LR]IPR022716Gcn1, N-terminalDomain
MA [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
MA [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
NA [auth LS]IPR028877Large ribosomal subunit protein eL20Family
NA [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
NA [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
OA [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
OA [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
OA [auth LT]IPR001147Large ribosomal subunit protein eL21Family
OA [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth LU]IPR002671Large ribosomal subunit protein eL22Family
PA [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
QA [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
QA [auth LV]IPR000218Large ribosomal subunit protein uL14Family
QA [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
RA [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
RA [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
RA [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
SA [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
SA [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth LY]IPR005824KOWDomain
SA [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
TA [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
TA [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
TA [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
TA [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
TA [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
VA [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
VA [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
VA [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
VA [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
VA [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
WA [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
WA [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
WA [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
XA [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
XA [auth Le]IPR001515Large ribosomal subunit protein eL32Family
YA [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
YA [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
YA [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
YA [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
ZA [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
ZA [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
AB [auth Lh]IPR003674Oligosaccharyl transferase, STT3 subunitFamily
AB [auth Lh]IPR048307Oligosaccharyl transferase STT3, N-terminal domainDomain
AB [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AB [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
AB [auth Lh]IPR048999STT3/PglB/AglB, core domainDomain
BB [auth Li]IPR000509Large ribosomal subunit protein eL36Family
BB [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
CB [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
CB [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
CB [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CB [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DB [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
DB [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
EB [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
EB [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
FB [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
FB [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FB [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GB [auth Lq]IPR029004Ribosomal eL28/Mak16Domain
GB [auth Lq]IPR002672Large ribosomal subunit protein eL28Family
KA [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
KA [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
KA [auth LP]IPR001063Large ribosomal subunit protein uL22Family
KA [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily