Annotations: 8P4O

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036387	3000766	SCOP2B (2022-06-29)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036385	3000766	SCOP2B (2022-06-29)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036388	3000766	SCOP2B (2022-06-29)
N [auth U]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
M [auth T]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
L [auth S]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
K [auth R]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
J [auth Q]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
I [auth P]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
H [auth O]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O [auth 1]	UcrQ	e8p4o11	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
N [auth U]	UcrQ	e8p4oU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
M [auth T]	UcrQ	e8p4oT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
L [auth S]	UcrQ	e8p4oS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
K [auth R]	UcrQ	e8p4oR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
J [auth Q]	UcrQ	e8p4oQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
I [auth P]	UcrQ	e8p4oP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
H [auth O]	UcrQ	e8p4oO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
G	UcrQ	e8p4oG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
F	UcrQ	e8p4oF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
E	UcrQ	e8p4oE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
D	UcrQ	e8p4oD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
C	UcrQ	e8p4oC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
B	UcrQ	e8p4oB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)
A	UcrQ	e8p4oA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: UcrQ	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O [auth 1]	PF02773	S-adenosylmethionine synthetase, C-terminal domain (S-AdoMet_synt_C)	S-adenosylmethionine synthetase, C-terminal domain	The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold.	Domain
O [auth 1]	PF02772	S-adenosylmethionine synthetase, central domain (S-AdoMet_synt_M)	S-adenosylmethionine synthetase, central domain	The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold.	Domain
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	PF00166	Chaperonin 10 Kd subunit (Cpn10)	Chaperonin 10 Kd subunit	This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G	PF00118	TCP-1/cpn60 chaperonin family (Cpn60_TCP1)	TCP-1/cpn60 chaperonin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth 1]	S-adenosylmethionine synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding potassium ion binding alkali metal ion binding methionine adenosyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity identical protein binding protein binding	oxoacid metabolic process sulfur amino acid metabolic process carbohydrate derivative metabolic process amino acid metabolic process L-methionine metabolic process nucleobase-containing compound metabolic process non-proteinogenic amino acid metabolic process nucleobase-containing small molecule metabolic process S-adenosylmethionine metabolic process small molecule metabolic process sulfur compound metabolic process purine ribonucleoside metabolic process homocysteine metabolic process L-methionine cycle oxoacid metabolic process sulfur amino acid metabolic process carbohydrate derivative metabolic process amino acid metabolic process L-methionine metabolic process nucleobase-containing compound metabolic process non-proteinogenic amino acid metabolic process nucleobase-containing small molecule metabolic process S-adenosylmethionine metabolic process small molecule metabolic process sulfur compound metabolic process purine ribonucleoside metabolic process homocysteine metabolic process L-methionine cycle modified amino acid metabolic process carboxylic acid metabolic process primary metabolic process nucleoside metabolic process purine-containing compound metabolic process proteinogenic amino acid metabolic process metabolic process cellular process purine nucleoside metabolic process ribonucleoside metabolic process sulfur compound biosynthetic process biosynthetic process S-adenosylmethionine biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	Co-chaperonin GroES	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein folding chaperone cation binding metal ion binding protein binding protein-folding chaperone binding identical protein binding	protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation virion assembly viral process viral life cycle response to stimulus protein folding biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation virion assembly viral process viral life cycle response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	protein-containing complex chaperonin ATPase complex cellular anatomical structure intracellular anatomical structure protein folding chaperone complex GroEL-GroES complex cytoplasm cytosol intracellular protein-containing complex
A, B, C, D, E A, B, C, D, E, F, G	Chaperonin GroEL	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent protein folding chaperone protein folding chaperone identical protein binding protein binding	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process virion assembly viral process viral life cycle protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process virion assembly viral process viral life cycle response to stimulus response to radiation response to abiotic stimulus response to stress response to heat response to temperature stimulus	cellular anatomical structure membrane protein-containing complex chaperonin ATPase complex intracellular anatomical structure protein folding chaperone complex GroEL-GroES complex cytoplasm cytosol intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
O [auth 1]	IPR022636	S-adenosylmethionine synthetase superfamily	Homologous Superfamily
O [auth 1]	IPR022629	S-adenosylmethionine synthetase, central domain	Domain
O [auth 1]	IPR022628	S-adenosylmethionine synthetase, N-terminal	Domain
O [auth 1]	IPR022631	S-adenosylmethionine synthetase, conserved site	Conserved Site
O [auth 1]	IPR022630	S-adenosylmethionine synthetase, C-terminal	Domain
O [auth 1]	IPR002133	S-adenosylmethionine synthetase	Family
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR018369	Chaperonin GroES, conserved site	Conserved Site
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR011032	GroES-like superfamily	Homologous Superfamily
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR020818	GroES chaperonin family	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR001844	Chaperonin Cpn60/GroEL	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR018370	Chaperonin Cpn60, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family