8P4O

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
E	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
G	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
G	SCOP2B Superfamily	GroEL apical domain-like	8043929	3000963	SCOP2B (2021-05-27)
G	SCOP2B Superfamily	GroEL-intermediate domain like	8032390	3001087	SCOP2B (2021-05-27)
G	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
G	SCOP2B Superfamily	GroEL equatorial domain-like	8032389	3001651	SCOP2B (2021-05-27)
H [auth O]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
I [auth P]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
J [auth Q]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
K [auth R]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
L [auth S]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
M [auth T]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
N [auth U]	SCOP2B Superfamily	GroES-like	8002348	3000002	SCOP2B (2021-05-27)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036387	3000766	SCOP2B (2021-05-27)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036385	3000766	SCOP2B (2021-05-27)
O [auth 1]	SCOP2B Superfamily	S-adenosylmethionine synthetase	8036388	3000766	SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF00118	TCP-1/cpn60 chaperonin family (Cpn60_TCP1)	TCP-1/cpn60 chaperonin family	-	Family
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	PF00166	Chaperonin 10 Kd subunit (Cpn10)	Chaperonin 10 Kd subunit	This family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1].	Domain
O [auth 1]	PF02773	S-adenosylmethionine synthetase, C-terminal domain (S-AdoMet_synt_C)	S-adenosylmethionine synthetase, C-terminal domain	The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold.	Domain
O [auth 1]	PF02772	S-adenosylmethionine synthetase, central domain (S-AdoMet_synt_M)	S-adenosylmethionine synthetase, central domain	The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Chaperonin GroEL	ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity protein binding binding protein-folding chaperone binding cation binding magnesium ion binding ion binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity protein binding binding protein-folding chaperone binding cation binding magnesium ion binding ion binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding unfolded protein binding isomerase activity catalytic activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides identical protein binding	protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process virion assembly viral process viral life cycle interleukin-6 production multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production regulation of metabolic process positive regulation of cellular biosynthetic process cellular response to stimulus mitochondrial unfolded protein response cellular response to topologically incorrect protein cellular response to stress response to stimulus response to stress response to topologically incorrect protein cellular response to unfolded protein response to unfolded protein response to radiation response to abiotic stimulus chaperone cofactor-dependent protein refolding chaperone-mediated protein folding 'de novo' protein folding 'de novo' post-translational protein folding protein localization establishment of protein localization cellular localization nitrogen compound transport protein transmembrane import into intracellular organelle transport protein targeting localization protein transmembrane transport cellular macromolecule localization mitochondrial transport protein import into mitochondrial intermembrane space establishment of localization mitochondrial transmembrane transport transmembrane transport establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle protein localization to mitochondrion protein targeting to mitochondrion establishment of protein localization to mitochondrion response to heat response to temperature stimulus regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of immune system process regulation of cell-cell adhesion positive regulation of immune system process positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation immune system process regulation of leukocyte cell-cell adhesion regulation of lymphocyte activation interferon-alpha production regulation of interferon-alpha production positive regulation of type I interferon production type I interferon production positive regulation of interferon-alpha production regulation of type I interferon production regulation of type II interferon production type II interferon production positive regulation of type II interferon production	membrane cellular anatomical entity protein-containing complex chaperonin ATPase complex intracellular anatomical structure protein folding chaperone complex GroEL-GroES complex cytoplasm cytosol intracellular protein-containing complex
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	Co-chaperonin GroES	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding protein folding chaperone cation binding metal ion binding protein-folding chaperone binding identical protein binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process chaperone cofactor-dependent protein refolding organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process chaperone cofactor-dependent protein refolding chaperone-mediated protein folding 'de novo' protein folding 'de novo' post-translational protein folding virion assembly viral process viral life cycle response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	protein-containing complex chaperonin ATPase complex intracellular anatomical structure protein folding chaperone complex GroEL-GroES complex cytoplasm cellular anatomical entity cytosol intracellular protein-containing complex
O [auth 1]	S-adenosylmethionine synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding potassium ion binding alkali metal ion binding methionine adenosyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity identical protein binding protein binding	S-adenosylmethionine cycle S-adenosylmethionine metabolic process cellular metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process one-carbon metabolic process sulfur compound biosynthetic process biosynthetic process S-adenosylmethionine biosynthetic process cellular biosynthetic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR018370	Chaperonin Cpn60, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G	IPR001844	Chaperonin Cpn60/GroEL	Family
A, B, C, D, E A, B, C, D, E, F, G	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR018369	Chaperonin GroES, conserved site	Conserved Site
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR011032	GroES-like superfamily	Homologous Superfamily
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR037124	GroES chaperonin superfamily	Homologous Superfamily
H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], H [auth O], I [auth P], J [auth Q], K [auth R], L [auth S], M [auth T], N [auth U]	IPR020818	GroES chaperonin family	Family
O [auth 1]	IPR022636	S-adenosylmethionine synthetase superfamily	Homologous Superfamily
O [auth 1]	IPR022629	S-adenosylmethionine synthetase, central domain	Domain
O [auth 1]	IPR022628	S-adenosylmethionine synthetase, N-terminal	Domain
O [auth 1]	IPR022631	S-adenosylmethionine synthetase, conserved site	Conserved Site
O [auth 1]	IPR022630	S-adenosylmethionine synthetase, C-terminal	Domain
O [auth 1]	IPR002133	S-adenosylmethionine synthetase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8P4O

CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage