8OSL
Cryo-EM structure of CLOCK-BMAL1 bound to the native Por enhancer nucleosome (map 2, additional 3D classification and flexible refinement)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8039342 | 3001387 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Core histone-like | 8039342 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e8oslA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e8oslE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8oslB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e8oslF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e8oslC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
G | F_UNCLASSIFIED | e8oslG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
H | F_UNCLASSIFIED | e8oslH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8oslD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth M] | F_UNCLASSIFIED | e8oslM3 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth M] | F_UNCLASSIFIED | e8oslM2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth O] | F_UNCLASSIFIED | e8oslO1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth N] | F_UNCLASSIFIED | e8oslN1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth N] | F_UNCLASSIFIED | e8oslN2 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: F_UNCLASSIFIED | ECOD (1.6) |
N [auth P] | F_UNCLASSIFIED | e8oslP1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
K [auth M], M [auth O] | PF00989 | PAS fold (PAS) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (M ... | Domain |
K [auth M], M [auth O] | PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain |
K [auth M], M [auth O] | PF14598 | PAS domain (PAS_11) | PAS domain | This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6) [1]. | Domain |
L [auth N], N [auth P] | PF00989 | PAS fold (PAS) | PAS fold | The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [4]. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (M ... | Domain |
L [auth N], N [auth P] | PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain |
L [auth N], N [auth P] | PF14598 | PAS domain (PAS_11) | PAS domain | This family includes the PAS-B domain of NCOA1 (Nuclear receptor coactivator 1), which binds to an LXXLL motif in the C-terminal region of STAT6 (Signal transducer and activator of transcription 6) [1]. | Domain |