Annotations: 8OQ4

AApoAII amyloid fibril Morphology II (ex vivo)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Kringle	e8oq4A01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Kringle	ECOD (v294.2)
B	DNA_topoisoIV	e8oq4B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C	DNA_topoisoIV	e8oq4C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
D	DNA_topoisoIV	e8oq4D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E	DNA_topoisoIV	e8oq4E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
F	DNA_topoisoIV	e8oq4F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
H	DNA_topoisoIV	e8oq4H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
I	DNA_topoisoIV	e8oq4I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
J [auth L]	DNA_topoisoIV	e8oq4L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K [auth M]	DNA_topoisoIV	e8oq4M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
M [auth O]	DNA_topoisoIV	e8oq4O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
N [auth P]	DNA_topoisoIV	e8oq4P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
P [auth R]	DNA_topoisoIV	e8oq4R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Q [auth S]	DNA_topoisoIV	e8oq4S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
R [auth T]	DNA_topoisoIV	e8oq4T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
S [auth U]	DNA_topoisoIV	e8oq4U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
T [auth V]	DNA_topoisoIV	e8oq4V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
U [auth Z]	DNA_topoisoIV	e8oq4Z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
V [auth W]	DNA_topoisoIV	e8oq4W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
W [auth J]	DNA_topoisoIV	e8oq4J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
X [auth K]	DNA_topoisoIV	e8oq4K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
O [auth Q]	DNA_topoisoIV	e8oq4Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L [auth N]	DNA_topoisoIV	e8oq4N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G	DNA_topoisoIV	e8oq4G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth M], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S], R [auth T], S [auth U], T [auth V], U [auth Z], V [auth W], W [auth J], X [auth K]	Apolipoprotein A-II	high-density lipoprotein particle receptor binding protein binding binding signaling receptor binding lipoprotein particle receptor binding heat shock protein binding phospholipid binding lipid binding sterol transfer activity lipid carrier activity lipid transfer activity transporter activity cholesterol transfer activity molecular carrier activity high-density lipoprotein particle receptor binding protein binding binding signaling receptor binding lipoprotein particle receptor binding heat shock protein binding phospholipid binding lipid binding sterol transfer activity lipid carrier activity lipid transfer activity transporter activity cholesterol transfer activity molecular carrier activity enzyme regulator activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity lipase inhibitor activity lipoprotein particle binding protein-containing complex binding protein-lipid complex binding high-density lipoprotein particle binding cation binding ion binding phosphatidylcholine binding quaternary ammonium group binding small molecule binding enzyme activator activity molecular function activator activity phosphatidylcholine-sterol O-acyltransferase activator activity sterol binding alcohol binding steroid binding cholesterol binding signaling receptor regulator activity receptor ligand activity signaling receptor activator activity apolipoprotein receptor binding protein heterodimerization activity protein dimerization activity identical protein binding protein homodimerization activity enzyme binding	regulation of protein stability biological regulation regulation of biological quality protein stabilization negative regulation of hydrolase activity regulation of molecular function regulation of catalytic activity negative regulation of lipase activity regulation of hydrolase activity negative regulation of molecular function negative regulation of catalytic activity localization transport macromolecule localization regulation of protein stability biological regulation regulation of biological quality protein stabilization negative regulation of hydrolase activity regulation of molecular function regulation of catalytic activity negative regulation of lipase activity regulation of hydrolase activity negative regulation of molecular function negative regulation of catalytic activity localization transport macromolecule localization reverse cholesterol transport lipid localization cholesterol transport lipid transport sterol transport organic hydroxy compound transport establishment of localization lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process primary metabolic process phospholipid metabolic process organophosphate metabolic process metabolic process cellular process phosphorus metabolic process lipid metabolic process regulation of localization import into cell positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization positive regulation of biological process vesicle-mediated transport cellular component organization positive regulation of endocytosis phagocytosis cellular component organization or biogenesis positive regulation of cellular process regulation of endocytosis regulation of biological process regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport endocytosis multicellular organismal process regulation of immune effector process response to stimulus negative regulation of biological process cytokine production negative regulation of cellular process regulation of cytokine production regulation of immune system process regulation of multicellular organismal process cytokine production involved in immune response negative regulation of macromolecule metabolic process production of molecular mediator of immune response regulation of biosynthetic process negative regulation of cytokine production involved in immune response regulation of cytokine production involved in immune response immune response negative regulation of metabolic process negative regulation of immune effector process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process immune effector process regulation of gene expression negative regulation of production of molecular mediator of immune response negative regulation of gene expression biosynthetic process negative regulation of immune system process negative regulation of biosynthetic process immune system process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of production of molecular mediator of immune response negative regulation of multicellular organismal process regulation of metabolic process positive regulation of interleukin-8 production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process interleukin-8 production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production negative regulation of sterol transport regulation of lipid transport negative regulation of transport negative regulation of lipid localization regulation of cholesterol transport negative regulation of cholesterol import regulation of sterol transport negative regulation of lipid transport negative regulation of cholesterol transport regulation of cholesterol import regulation of lipid localization cholesterol import plasma lipoprotein particle organization protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling regulation of plasma lipoprotein particle levels triglyceride-rich lipoprotein particle remodeling protein-lipid complex remodeling cholesterol efflux very-low-density lipoprotein particle remodeling negative regulation of very-low-density lipoprotein particle remodeling negative regulation of cellular component organization regulation of very-low-density lipoprotein particle remodeling peptidyl-methionine modification macromolecule modification peptidyl-amino acid modification protein metabolic process protein modification process negative regulation of catabolic process regulation of lipid metabolic process regulation of catabolic process regulation of lipid catabolic process regulation of primary metabolic process negative regulation of lipid metabolic process negative regulation of lipid catabolic process system process regulation of intestinal absorption digestive system process regulation of system process lipid digestion regulation of digestive system process intestinal lipid absorption digestion intestinal absorption regulation of intestinal lipid absorption intestinal cholesterol absorption regulation of intestinal cholesterol absorption protein oxidation cellular component biogenesis cellular component assembly high-density lipoprotein particle assembly protein-containing complex assembly plasma lipoprotein particle assembly protein-lipid complex assembly low-density lipoprotein particle remodeling glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process phospholipid biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process phosphatidylcholine metabolic process glycerolipid metabolic process phosphatidylcholine biosynthetic process neutral lipid metabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process diacylglycerol metabolic process acylglycerol metabolic process diacylglycerol catabolic process phospholipid transport organophosphate ester transport phospholipid efflux sterol homeostasis chemical homeostasis homeostatic process cholesterol homeostasis lipid homeostasis positive regulation of catabolic process positive regulation of lipid catabolic process positive regulation of lipid metabolic process secondary alcohol metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process small molecule metabolic process response to hexose response to monosaccharide response to carbohydrate response to glucose response to chemical response to oxygen-containing compound high-density lipoprotein particle clearance plasma lipoprotein particle clearance lipoprotein metabolic process high-density lipoprotein particle remodeling developmental process animal organ regeneration anatomical structure development animal organ development regeneration cellular response to stimulus cellular response to lipoprotein particle stimulus cellular response to nitrogen compound response to nitrogen compound cellular response to amyloid-beta cellular response to oxygen-containing compound cellular response to chemical stimulus response to amyloid-beta	protein-containing complex cellular anatomical structure extracellular region plasma lipoprotein particle high-density lipoprotein particle extracellular protein-containing complex lipoprotein particle protein-lipid complex intracellular anatomical structure cytoplasm cytosol spherical high-density lipoprotein particle chylomicron very-low-density lipoprotein particle protein-containing complex cellular anatomical structure extracellular region plasma lipoprotein particle high-density lipoprotein particle extracellular protein-containing complex lipoprotein particle protein-lipid complex intracellular anatomical structure cytoplasm cytosol spherical high-density lipoprotein particle chylomicron very-low-density lipoprotein particle triglyceride-rich plasma lipoprotein particle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth M], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S], R [auth T], S [auth U], T [auth V], U [auth Z], V [auth W], W [auth J], X [auth K]	IPR006801	Apolipoprotein A-II (ApoA-II)	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth M], L [auth N], M [auth O], N [auth P], O [auth Q], P [auth R], Q [auth S], R [auth T], S [auth U], T [auth V], U [auth Z], V [auth W], W [auth J], X [auth K]	IPR036172	Apolipoprotein A-II (ApoA-II) superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8OQ4 | pdb_00008oq4

AApoAII amyloid fibril Morphology II (ex vivo)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage