8OOT

CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state2

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth J]	PF00022	e8ootJ2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00022	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I]	PF08265	YL1 nuclear protein C-terminal domain (YL1_C)	YL1 nuclear protein C-terminal domain	This domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins.	Domain
B [auth J]	PF00022	Actin (Actin)	Actin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth I]	Chromatin-remodeling complex subunit IES6	-	protein-DNA complex organization cellular component organization protein-containing complex organization chromatin organization chromatin remodeling cellular process cellular component organization or biogenesis	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle SWI/SNF superfamily-type complex non-membrane-bounded organelle INO80-type complex membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle SWI/SNF superfamily-type complex non-membrane-bounded organelle INO80-type complex catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity Ino80 complex organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen
B [auth J]	Actin-related protein 5	-	protein localization protein localization to microtubule cytoskeleton establishment of protein localization cellular localization nitrogen compound transport transport protein transport along microtubule microtubule-based protein transport protein localization to microtubule organizing center localization cellular macromolecule localization establishment of localization in cell protein localization to spindle pole body transport along microtubule protein localization protein localization to microtubule cytoskeleton establishment of protein localization cellular localization nitrogen compound transport transport protein transport along microtubule microtubule-based protein transport protein localization to microtubule organizing center localization cellular macromolecule localization establishment of localization in cell protein localization to spindle pole body transport along microtubule protein transport along microtubule to mitotic spindle pole body intracellular transport establishment of protein localization to spindle pole body establishment of localization protein transport along microtubule to spindle pole body establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle protein localization to cytoskeleton microtubule-based transport cellular process microtubule-based process cytoskeleton-dependent intracellular transport microtubule-based movement protein localization to mitotic spindle pole body intracellular protein transport regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process establishment of organelle localization attachment of spindle microtubules to kinetochore metaphase chromosome alignment chromosome localization organelle localization nuclear chromosome segregation cell cycle establishment of chromosome localization chromosome segregation cell cycle process mitotic metaphase chromosome alignment mitotic cell cycle cellular component organization mitotic sister chromatid segregation cellular component organization or biogenesis mitotic nuclear division organelle fission attachment of mitotic spindle microtubules to kinetochore chromosome organization sister chromatid segregation organelle organization nuclear division mitotic cell cycle process sister chromatid biorientation mitotic sister chromatid biorientation	membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle SWI/SNF superfamily-type complex non-membrane-bounded organelle INO80-type complex membrane-bounded organelle ATPase complex protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle SWI/SNF superfamily-type complex non-membrane-bounded organelle INO80-type complex catalytic complex protein-DNA complex chromatin intracellular membrane-bounded organelle cellular anatomical entity Ino80 complex organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome DASH complex outer kinetochore cytoplasm mitotic spindle cytoskeleton spindle microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I]	IPR013272	Vps72/YL1, C-terminal	Domain
A [auth I]	IPR029525	INO80 complex, subunit Ies6	Family
B [auth J]	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
B [auth J]	IPR004000	Actin family	Family
B [auth J]	IPR013959	DASH complex subunit Dad4	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.