8OE4

Cryo-EM structure of a pre-dimerized human IL-23 complete extracellular signaling complex.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFibronectin type III8055151 3002063 SCOP2B (2021-05-27)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like8054841 3000071 SCOP2B (2021-05-27)
ASCOP2B SuperfamilyFibronectin type III8055537 3002063 SCOP2B (2021-05-27)
BSCOP2B Superfamily4-helical cytokines8092382 3001717 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10420Cytokine interleukin-12p40 C-terminus (IL12p40_C)Cytokine interleukin-12p40 C-terminusIL12p40_C is the largely beta stranded C-terminal, D3, domain of interleukin-12p40 or interleukin-12B. This interleukin is produced on stimulation by macrophage-engulfed micro-organisms and other stimuli, when it dimerises with interleukin-12p35 to f ...IL12p40_C is the largely beta stranded C-terminal, D3, domain of interleukin-12p40 or interleukin-12B. This interleukin is produced on stimulation by macrophage-engulfed micro-organisms and other stimuli, when it dimerises with interleukin-12p35 to form a heterodimer which then binds to receptors on natural killer cells to activate them to destroy the micro-organisms [1]. This domain contains two disulfide bridges, one of which serves to bind p40 to p35 and the other to hold the beta strands within the domain together. The cupped shape of the p35 binding interface matches the elbow-like bend between D2 and D3 in p40 [2]. The domain is often associated with family fn3, Pfam:PF00041.
Domain
PF16649Interleukin 23 subunit alpha (IL23)Interleukin 23 subunit alphaThis family, interleukin 23 subunit alpha, is a heterodimer consisting of a 40 kDa subunit - p40 - that is shared with IL12 and a unique 19 kDa subunit - p19. IL23 is a pro-inflammatory cytokine that binds to adnectins and thus plays a key role in th ...This family, interleukin 23 subunit alpha, is a heterodimer consisting of a 40 kDa subunit - p40 - that is shared with IL12 and a unique 19 kDa subunit - p19. IL23 is a pro-inflammatory cytokine that binds to adnectins and thus plays a key role in the pathogenesis of several autoimmune and inflammatory diseases. IL23 signalling on the cell membrane works through the interaction of four proteins, two of which are shared with the IL12-receptor complex; signalling through the cell membrane involves the combined aggregation of at least two receptor components and then the subsequent activation of the Jak/Tyk tyrosine kinases and the family of STAT transcription factors [1,2,3].
Domain
PF00041Fibronectin type III domain (fn3)Fibronectin type III domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Interleukin-12 subunit beta
Interleukin-23 subunit alpha
Interleukin-23 receptor,Calmodulin-1
Interleukin-12 receptor subunit beta-1,Death-associated protein kinase 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
IPR003530Long hematopoietin receptor, soluble alpha chain, conserved siteConserved Site
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR007110Immunoglobulin-like domainDomain
IPR003598Immunoglobulin subtype 2Domain
IPR019482Interleukin-12 beta, central domainDomain
IPR015528Interleukin-12 betaFamily
IPR003961Fibronectin type IIIDomain
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR009079Four-helical cytokine-like, coreHomologous Superfamily
IPR010831Interleukin-23 alphaFamily
IPR003961Fibronectin type IIIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR002048EF-hand domainDomain
IPR018247EF-Hand 1, calcium-binding siteBinding Site
IPR011992EF-hand domain pairHomologous Superfamily
IPR003961Fibronectin type IIIDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR003529Long hematopoietin receptor, Gp130 family 2, conserved siteConserved Site
IPR036116Fibronectin type III superfamilyHomologous Superfamily
IPR017441Protein kinase, ATP binding siteBinding Site
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
IPR000719Protein kinase domainDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR002110Ankyrin repeatRepeat
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR000488Death domainDomain
IPR020676Death-associated protein kinase 1, catalytic domainDomain
IPR020859Roc domainDomain
IPR008271Serine/threonine-protein kinase, active siteActive Site