Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth J] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| F [auth G] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| C [auth D] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| V [auth N] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| T [auth X] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| Q [auth S] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| O [auth Q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| N [auth P] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| K [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth J] | DNA_topoisoIV | e8k3oJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| R [auth T] | DNA_topoisoIV | e8k3oT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| H [auth I] | DNA_topoisoIV | e8k3oI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| G [auth H] | DNA_topoisoIV | e8k3oH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| F [auth G] | DNA_topoisoIV | e8k3oG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| E [auth F] | DNA_topoisoIV | e8k3oF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| D [auth E] | DNA_topoisoIV | e8k3oE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| C [auth D] | DNA_topoisoIV | e8k3oD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| V [auth N] | DNA_topoisoIV | e8k3oN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| T [auth X] | DNA_topoisoIV | e8k3oX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| B [auth C] | DNA_topoisoIV | e8k3oC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| Q [auth S] | DNA_topoisoIV | e8k3oS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| P [auth R] | DNA_topoisoIV | e8k3oR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| O [auth Q] | DNA_topoisoIV | e8k3oQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| N [auth P] | DNA_topoisoIV | e8k3oP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| M [auth O] | DNA_topoisoIV | e8k3oO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| L [auth M] | DNA_topoisoIV | e8k3oM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| K [auth L] | DNA_topoisoIV | e8k3oL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| J [auth K] | DNA_topoisoIV | e8k3oK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| A [auth B] | DNA_topoisoIV | e8k3oB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth J] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| R [auth T] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| H [auth I] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| G [auth H] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| E [auth F] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| D [auth E] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| D [auth E] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| C [auth D] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| C [auth D] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| V [auth N] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| B [auth C] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| B [auth C] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| Q [auth S] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| P [auth R] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| O [auth Q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| N [auth P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| M [auth O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| L [auth M] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| K [auth L] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| J [auth K] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| A [auth B] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |














