8K3O

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth F]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
N [auth P]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
Q [auth S]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
V [auth N]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
O [auth Q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
D [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
E [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
G [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
I [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
J [auth K]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
K [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
L [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
M [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
N [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
P [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
Q [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
R [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
V [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
A [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
O [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
B [auth C]PF07650KH domain (KH_2)KH domain- Domain
B [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
C [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
C [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
H [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth E]30S ribosomal protein S5
E [auth F]30S ribosomal protein S6, fully modified isoform
G [auth H]30S ribosomal protein S8
I [auth J]30S ribosomal protein S10
J [auth K]30S ribosomal protein S11
K [auth L]30S ribosomal protein S12
L [auth M]30S ribosomal protein S13
M [auth O]30S ribosomal protein S15
N [auth P]30S ribosomal protein S16
P [auth R]30S ribosomal protein S18
Q [auth S]30S ribosomal protein S19
R [auth T]30S ribosomal protein S20
V [auth N]30S ribosomal protein S14
A [auth B]30S ribosomal protein S2
O [auth Q]30S ribosomal protein S17
S [auth V]Cleaved AP-mRNA---
B [auth C]30S ribosomal protein S3
T [auth X]30S ribosomal protein S21
U [auth A]16S rRNA---
C [auth D]30S ribosomal protein S4
F [auth G]30S ribosomal protein S7
H [auth I]30S ribosomal protein S9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth E]IPR000851Small ribosomal subunit protein uS5Family
D [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
D [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
D [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
D [auth E]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
D [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth F]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
E [auth F]IPR000529Small ribosomal subunit protein bS6Family
E [auth F]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
E [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
E [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth H]IPR000630Small ribosomal subunit protein uS8Family
G [auth H]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
G [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
I [auth J]IPR027486Small ribosomal subunit protein uS10 domainDomain
I [auth J]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
I [auth J]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
I [auth J]IPR001848Small ribosomal subunit protein uS10Family
J [auth K]IPR001971Small ribosomal subunit protein uS11Family
J [auth K]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
J [auth K]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth K]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
K [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
K [auth L]IPR006032Small ribosomal subunit protein uS12Family
K [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
L [auth M]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
L [auth M]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
L [auth M]IPR001892Small ribosomal subunit protein uS13Family
L [auth M]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
L [auth M]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
M [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
M [auth O]IPR000589Small ribosomal subunit protein uS15Family
M [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
N [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
N [auth P]IPR000307Small ribosomal subunit protein bS16Family
N [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
P [auth R]IPR001648Small ribosomal subunit protein bS18Family
P [auth R]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
P [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Q [auth S]IPR002222Small ribosomal subunit protein uS19Family
Q [auth S]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
Q [auth S]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Q [auth S]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth T]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
R [auth T]IPR002583Small ribosomal subunit protein bS20Family
V [auth N]IPR001209Small ribosomal subunit protein uS14Family
V [auth N]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
V [auth N]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
A [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
A [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth B]IPR001865Small ribosomal subunit protein uS2Family
O [auth Q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
O [auth Q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
O [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth Q]IPR000266Small ribosomal subunit protein uS17Family
B [auth C]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
B [auth C]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
B [auth C]IPR004087K Homology domainDomain
B [auth C]IPR004044K Homology domain, type 2Domain
B [auth C]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
B [auth C]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
B [auth C]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
B [auth C]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
T [auth X]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth X]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
T [auth X]IPR001911Small ribosomal subunit protein bS21Family
C [auth D]IPR002942RNA-binding S4 domainDomain
C [auth D]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
C [auth D]IPR022801Small ribosomal subunit protein uS4Family
C [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
C [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
C [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth G]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth G]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth G]IPR000235Small ribosomal subunit protein uS7Family
F [auth G]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
F [auth G]IPR023798Small ribosomal subunit protein uS7 domainDomain
H [auth I]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
H [auth I]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
H [auth I]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth I]IPR000754Small ribosomal subunit protein uS9Family
H [auth I]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily