8K35

Structure of the bacteriophage lambda tail tip complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P [auth L]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
Q [auth R]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
R [auth T]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
S [auth U]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
T [auth V]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
U [auth W]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth I], B [auth A], C [auth B]	PF13550	Putative phage tail protein (Phage-tail_3)	Putative phage tail protein	This putative domain is found in the large gene transfer agent protein. These produce defective phage like particles. This domain is similar to other phage-tail protein families.	Domain
A [auth I], B [auth A], C [auth B]	PF09327	Domain of unknown function (DUF1983) (DUF1983)	Domain of unknown function (DUF1983)	-	Family
D [auth J], E [auth G], F [auth N]	PF05100	Phage minor tail protein L (Phage_tail_L)	Phage minor tail protein L	-	Family
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	PF05939	Phage minor tail protein (Phage_min_tail)	Phage minor tail protein	-	Family
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	PF16461	Lambda phage tail tube protein, TTP (Phage_TTP_12)	Lambda phage tail tube protein, TTP	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth I], B [auth A], C [auth B]	Tip attachment protein J	-	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly symbiont genome ejection through host cell envelope symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell symbiont entry into host entry receptor-mediated virion attachment to host cell	virus tail virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
D [auth J], E [auth G], F [auth N]	Tail tip protein L	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity virus tail virion component
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	Tail tip protein M	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity virus tail virion component
M [auth x], N [auth K], O [auth Q]	Tail tip assembly protein I	-	virion assembly viral tail assembly viral process viral life cycle	host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	Tail tube protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail, tube virus tail virion component host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region cellular anatomical entity
V [auth P], W [auth M], X [auth S]	Tape measure protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth I], B [auth A], C [auth B]	IPR053171	Viral Tip Attachment Protein	Family
A [auth I], B [auth A], C [auth B]	IPR003961	Fibronectin type III	Domain
A [auth I], B [auth A], C [auth B]	IPR021034	Domain of unknown function DUF3672	Domain
A [auth I], B [auth A], C [auth B]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth I], B [auth A], C [auth B]	IPR032876	Tip attachment protein J	Domain
A [auth I], B [auth A], C [auth B]	IPR015406	Domain of unknown function DUF1983	Domain
A [auth I], B [auth A], C [auth B]	IPR036116	Fibronectin type III superfamily	Homologous Superfamily
D [auth J], E [auth G], F [auth N]	IPR006487	Bacteriophage lambda, Tail tip protein L	Family
G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], G [auth H], H [auth O], I [auth C], J [auth E], K [auth D], L [auth F]	IPR010265	Bacteriophage lambda, Tail tip protein M	Family
M [auth x], N [auth K], O [auth Q]	IPR010654	Bacteriophage lambda tail assembly I	Family
M [auth x], N [auth K], O [auth Q]	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	IPR032494	Lambda phage tail tube protein	Family
P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], P [auth L], Q [auth R], R [auth T], S [auth U], T [auth V], U [auth W]	IPR003343	Bacterial Ig-like domain, group 2	Domain
V [auth P], W [auth M], X [auth S]	IPR043680	Tape measure protein	Family
V [auth P], W [auth M], X [auth S]	IPR006431	Bacteriophage tail tape measure, C-terminal	Domain
V [auth P], W [auth M], X [auth S]	IPR009628	Bacteriophage tail tape measure, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.