Annotations: 8K2V

3-Methylcrotonyl-CoA Carboxylase in MCCD state with Acetyl CoA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	DNA_topoisoIV	e8k2vF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
E	DNA_topoisoIV	e8k2vE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
D	DNA_topoisoIV	e8k2vD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
C	DNA_topoisoIV	e8k2vC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
B	DNA_topoisoIV	e8k2vB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
A	DNA_topoisoIV	e8k2vA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
L [auth H]	DNA_topoisoIV	e8k2vH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
K [auth L]	DNA_topoisoIV	e8k2vL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
J [auth K]	DNA_topoisoIV	e8k2vK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
I [auth J]	DNA_topoisoIV	e8k2vJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
H [auth I]	DNA_topoisoIV	e8k2vI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
G	DNA_topoisoIV	e8k2vG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00364	Biotin-requiring enzyme (Biotin_lipoyl)	Biotin-requiring enzyme	This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins.	Domain
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	PF01039	Carboxyl transferase domain (Carboxyl_trans)	Carboxyl transferase domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding biotin binding organic acid binding vitamin binding carboxylic acid binding monocarboxylic acid binding sulfur compound binding biotin carboxylase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity CoA carboxylase activity methylcrotonoyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds cation binding metal ion binding	catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process amino acid catabolic process biotin metabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process amino acid catabolic process biotin metabolic process sulfur compound metabolic process monocarboxylic acid metabolic process L-leucine catabolic process L-amino acid catabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process proteinogenic amino acid catabolic process L-leucine metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex methylcrotonoyl-CoA carboxylase complex membrane-enclosed lumen mitochondrial matrix membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex methylcrotonoyl-CoA carboxylase complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding CoA carboxylase activity methylcrotonoyl-CoA carboxylase activity ligase activity, forming carbon-carbon bonds catalytic activity ligase activity	catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process amino acid catabolic process nucleoside phosphate metabolic process catabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process branched-chain amino acid catabolic process carboxylic acid catabolic process metabolic process cellular process small molecule metabolic process branched-chain amino acid metabolic process small molecule catabolic process amino acid catabolic process nucleoside phosphate metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process sulfur compound metabolic process phosphorus metabolic process coenzyme A metabolic process L-leucine catabolic process L-amino acid catabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process proteinogenic amino acid catabolic process L-leucine metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex methylcrotonoyl-CoA carboxylase complex membrane-enclosed lumen mitochondrial matrix membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytosol protein-containing complex catalytic complex methylcrotonoyl-CoA carboxylase complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR005481	Biotin carboxylase-like, N-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011761	ATP-grasp fold	Domain
A, B, C, D, E A, B, C, D, E, F	IPR011764	Biotin carboxylation domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR050856	Biotin-dependent Carboxylase Complex	Family
A, B, C, D, E A, B, C, D, E, F	IPR005479	Carbamoyl phosphate synthase, ATP-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR005482	Biotin carboxylase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR016185	Pre-ATP-grasp domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR011054	Rudiment single hybrid motif	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR011053	Single hybrid motif	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001882	Biotin-binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F	IPR000089	Biotin/lipoyl attachment	Domain
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	IPR011763	Acetyl-coenzyme A carboxyltransferase, C-terminal	Domain
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	IPR011762	Acetyl-coenzyme A carboxyltransferase, N-terminal	Domain
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	IPR034733	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Domain
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	IPR045190	Methylcrotonoyl-CoA carboxylase beta chain MCCB/AccD1-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	: Q96RQ3	3-methylcrotonyl-CoA carboxylase deficiency 3-methylcrotonyl-CoA carboxylase 1 deficiency Hyperammonemia interstitial cystitis osteosarcoma inborn errors of metabolism lung adenocarcinoma pancreatic ductal adenocarcinoma drug-induced liver injury intellectual disability malignant pancreatic neoplasm
G, H [auth I], I [auth J], J [auth K], K [auth L], G, H [auth I], I [auth J], J [auth K], K [auth L], L [auth H]	: Q9HCC0	3-methylcrotonyl-CoA carboxylase deficiency 3-methylcrotonyl-CoA carboxylase 2 deficiency pancreatic intraductal papillary-mucinous neoplasm 3-methylcrotonyl CoA carboxylase 2 deficiency breast cancer interstitial cystitis lung cancer osteosarcoma psoriasis 3-methylcrotonyl-CoA carboxylase 1 deficiency astrocytic tumor breast carcinoma inborn errors of metabolism invasive ductal breast carcinoma malignant ependymoma 3-methylcrotonyl-CoA carboxylase deficiency 3-methylcrotonyl-CoA carboxylase 2 deficiency pancreatic intraductal papillary-mucinous neoplasm 3-methylcrotonyl CoA carboxylase 2 deficiency breast cancer interstitial cystitis lung cancer osteosarcoma psoriasis 3-methylcrotonyl-CoA carboxylase 1 deficiency astrocytic tumor breast carcinoma inborn errors of metabolism invasive ductal breast carcinoma malignant ependymoma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor glioblastoma intellectual disability large cell medulloblastoma non-small cell lung carcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.