Annotations: 8JC9

Cryo-EM structure of the LH1 complex from thermochromatium tepidum

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth V]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
X [auth T]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
V [auth R]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
T [auth P]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
R [auth N]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
P [auth J]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
H [auth 8]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
F [auth 6]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
D [auth 4]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
BA [auth Z]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)
B [auth 2]	SCOP2B Superfamily	Light-harvesting complex subunits	8076355	3000199	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth V]	V-set	e8jc9V1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
X [auth T]	V-set	e8jc9T1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
V [auth R]	V-set	e8jc9R1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
T [auth P]	V-set	e8jc9P1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
R [auth N]	V-set	e8jc9N1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
P [auth J]	V-set	e8jc9J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
N [auth G]	V-set	e8jc9G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
L [auth E]	V-set	e8jc9E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
J [auth B]	V-set	e8jc9B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
H [auth 8]	V-set	e8jc981	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
F [auth 6]	V-set	e8jc961	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
D [auth 4]	V-set	e8jc941	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
BA [auth Z]	V-set	e8jc9Z1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
B [auth 2]	V-set	e8jc921	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Y [auth U]	V-set	e8jc9U1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
W [auth S]	V-set	e8jc9S1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
U [auth Q]	V-set	e8jc9Q1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
S [auth O]	V-set	e8jc9O1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
Q [auth K]	V-set	e8jc9K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
O [auth I]	V-set	e8jc9I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
M [auth F]	V-set	e8jc9F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
K [auth D]	V-set	e8jc9D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
I [auth A]	V-set	e8jc9A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
G [auth 7]	V-set	e8jc971	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
E [auth 5]	V-set	e8jc951	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
C [auth 3]	V-set	e8jc931	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
AA [auth Y]	V-set	e8jc9Y1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)
A [auth 1]	V-set	e8jc911	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: V-set	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	LH1 beta polypeptide	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	LH1 alpha polypeptide	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR035889	Light-harvesting complex	Homologous Superfamily
B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], B [auth 2], BA [auth Z], D [auth 4], F [auth 6], H [auth 8], J [auth B], L [auth E], N [auth G], P [auth J], R [auth N], T [auth P], V [auth R], X [auth T], Z [auth V]	IPR002362	Light-harvesting protein B beta chain	Family
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR018332	Antenna complex, alpha subunit	Family
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], A [auth 1], AA [auth Y], C [auth 3], E [auth 5], G [auth 7], I [auth A], K [auth D], M [auth F], O [auth I], Q [auth K], S [auth O], U [auth Q], W [auth S], Y [auth U]	IPR035889	Light-harvesting complex	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], C [auth 3] A [auth 1], AA [auth Y], B [auth 2], BA [auth Z], C [auth 3], D [auth 4], E [auth 5], F [auth 6], G [auth 7], H [auth 8], I [auth A], J [auth B], K [auth D], L [auth E], M [auth F], N [auth G], O [auth I], P [auth J], Q [auth K], R [auth N], S [auth O], T [auth P], U [auth Q], V [auth R], W [auth S], X [auth T], Y [auth U], Z [auth V]	PDBTM	Annotated as membrane protein by PDBTM