Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth G]SCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2021-05-27)
O [auth M]SCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2021-05-27)
CSCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2021-05-27)
S [auth Q]SCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2021-05-27)
K [auth R]SCOP2B SuperfamilyRING/U-box like8040866 3000160 SCOP2B (2021-05-27)
U [auth V]SCOP2B SuperfamilyRING/U-box like8040866 3000160 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth E]PF00888e8jaqE1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF00888ECOD (1.6)
N [auth L]PF00888e8jaqL1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF00888ECOD (1.6)
H [auth G]PF00240e8jaqG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
O [auth M]PF00240e8jaqM1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
CPF00240e8jaqC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
S [auth Q]PF00240e8jaqQ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
TPF03931e8jaqT1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
DPF03931e8jaqD1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
I [auth H]PF03931e8jaqH1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
P [auth N]PF03931e8jaqN1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
K [auth R]PF12678e8jaqR1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: PF12678ECOD (1.6)
U [auth V]PF12678e8jaqV1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: PF12678ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
F [auth B],
L [auth J],
M [auth K]
PF13374Tetratricopeptide repeat (TPR_10)Tetratricopeptide repeat- Repeat
A,
F [auth B],
L [auth J],
M [auth K]
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
B [auth E],
J [auth I],
N [auth L],
V [auth U]
PF00888Cullin family (Cullin)Cullin family- Repeat
C,
H [auth G],
O [auth M],
S [auth Q]
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
D,
I [auth H],
P [auth N],
T
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
K [auth R],
U [auth V]
PF12678RING-H2 zinc finger domain (zf-rbx1)RING-H2 zinc finger domainThere are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ...There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
F [auth B],
L [auth J],
M [auth K]
Amyloid protein-binding protein 2
B [auth E],
J [auth I],
N [auth L],
V [auth U]
Cullin-2
C,
H [auth G],
O [auth M],
S [auth Q]
Elongin-B
D,
I [auth H],
P [auth N],
T
Elongin-C
E [auth S],
G [auth F],
Q [auth O],
R [auth P]
XP_211896 C-degron---
K [auth R],
U [auth V]
E3 ubiquitin-protein ligase RBX1, N-terminally processed

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
F [auth B],
L [auth J],
M [auth K]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A,
F [auth B],
L [auth J],
M [auth K]
IPR042476Amyloid protein-binding protein 2Family
A,
F [auth B],
L [auth J],
M [auth K]
IPR019734Tetratricopeptide repeatRepeat
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR045093CullinFamily
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR019559Cullin protein, neddylation domainDomain
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR016158Cullin homology domainDomain
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR016157Cullin, conserved siteConserved Site
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR001373Cullin, N-terminalDomain
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR036317Cullin homology domain superfamilyHomologous Superfamily
B [auth E],
J [auth I],
N [auth L],
V [auth U]
IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
C,
H [auth G],
O [auth M],
S [auth Q]
IPR000626Ubiquitin-like domainDomain
C,
H [auth G],
O [auth M],
S [auth Q]
IPR039049Elongin BFamily
C,
H [auth G],
O [auth M],
S [auth Q]
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
D,
I [auth H],
P [auth N],
T
IPR016073SKP1 component, POZ domainDomain
D,
I [auth H],
P [auth N],
T
IPR001232S-phase kinase-associated protein 1-likeFamily
D,
I [auth H],
P [auth N],
T
IPR039948Elongin-CFamily
D,
I [auth H],
P [auth N],
T
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
K [auth R],
U [auth V]
IPR024766Zinc finger, RING-H2-typeDomain
K [auth R],
U [auth V]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
K [auth R],
U [auth V]
IPR001841Zinc finger, RING-typeDomain