8JAQ
Structure of CRL2APPBP2 bound with RxxGP degron (tetramer)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
S [auth Q] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
O [auth M] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2022-06-29) |
U [auth V] | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
K [auth R] | SCOP2B Superfamily | RING/U-box like | 8040866 | 3000160 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth E] | PF00888 | e8jaqE1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
N [auth L] | PF00888 | e8jaqL1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
S [auth Q] | PF00240 | e8jaqQ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
C | PF00240 | e8jaqC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
H [auth G] | PF00240 | e8jaqG1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
O [auth M] | PF00240 | e8jaqM1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D | PF03931 | e8jaqD1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
I [auth H] | PF03931 | e8jaqH1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
P [auth N] | PF03931 | e8jaqN1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
T | PF03931 | e8jaqT1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
U [auth V] | PF12678 | e8jaqV1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12678 | ECOD (1.6) |
K [auth R] | PF12678 | e8jaqR1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12678 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, F [auth B], L [auth J], M [auth K] | PF13374 | Tetratricopeptide repeat (TPR_10) | Tetratricopeptide repeat | - | Repeat |
A, F [auth B], L [auth J], M [auth K] | PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat |
B [auth E], J [auth I], N [auth L], V [auth U] | PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat |
C, H [auth G], O [auth M], S [auth Q] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
D, I [auth H], P [auth N], T | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
K [auth R], U [auth V] | PF12678 | RING-H2 zinc finger domain (zf-rbx1) | RING-H2 zinc finger domain | There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell ... | Domain |