8J9Z
cryo-EM structure of viral topoisomerase in conformation 2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00521 | e8j9zA5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00521 | ECOD (1.6) |
A | F_UNCLASSIFIED | e8j9zA4 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF16898 | e8j9zA1 | A: a+b two layers | X: SSHS domain | H: SSHS domain in type II DNA topoisomerase (From Topology) | T: SSHS domain in type II DNA topoisomerase | F: PF16898 | ECOD (1.6) |
A | PF00521 | e8j9zA2 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: PF00521 | ECOD (1.6) |
A | F_UNCLASSIFIED | e8j9zA3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF00521 | e8j9zB3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF00521 | ECOD (1.6) |
B | F_UNCLASSIFIED | e8j9zB4 | A: alpha bundles | X: alpha-helical domain in type II DNA topoisomerase (From Topology) | H: alpha-helical domain in type II DNA topoisomerase (From Topology) | T: alpha-helical domain in type II DNA topoisomerase | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF16898 | e8j9zB2 | A: a+b two layers | X: SSHS domain | H: SSHS domain in type II DNA topoisomerase (From Topology) | T: SSHS domain in type II DNA topoisomerase | F: PF16898 | ECOD (1.6) |
B | PF00521 | e8j9zB5 | A: a+b two layers | X: a+b domain in type II DNA topoisomerase (From Topology) | H: a+b domain in type II DNA topoisomerase (From Topology) | T: a+b domain in type II DNA topoisomerase | F: PF00521 | ECOD (1.6) |
B | F_UNCLASSIFIED | e8j9zB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16898 | C-terminal associated domain of TOPRIM (TOPRIM_C) | C-terminal associated domain of TOPRIM | - | Family | |
PF00521 | DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) | DNA gyrase/topoisomerase IV, subunit A | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001154 | DNA topoisomerase II, eukaryotic-type | Family | |
IPR018522 | DNA topoisomerase, type IIA, conserved site | Conserved Site | |
IPR013760 | DNA topoisomerase, type IIA-like domain superfamily | Homologous Superfamily | |
IPR013757 | DNA topoisomerase, type IIA, alpha-helical domain superfamily | Homologous Superfamily | |
IPR013758 | DNA topoisomerase, type IIA, domain A, alpha-beta | Homologous Superfamily | |
IPR036890 | Histidine kinase/HSP90-like ATPase superfamily | Homologous Superfamily | |
IPR013759 | DNA topoisomerase, type IIA, subunit B, C-terminal | Homologous Superfamily | |
IPR031660 | C-terminal associated domain of TOPRIM | Domain | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR001241 | DNA topoisomerase, type IIA | Family | |
IPR050634 | DNA Topoisomerase II Enzyme | Family | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily | |
IPR002205 | DNA topoisomerase, type IIA, domain A | Domain |