8IMX | pdb_00008imx

Cryo-EM structure of GPI-T with a chimeric GPI-anchored protein


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth K]DNA_topoisoIVe8imxK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
A [auth D]Ribosomal_S3Aee8imxD01 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Ribosomal_S3AeECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth U]PF06728GPI transamidase subunit PIG-U (PIG-U)GPI transamidase subunit PIG-U- Family
D [auth S]PF10510Phosphatidylinositol-glycan biosynthesis class S protein (PIG-S)Phosphatidylinositol-glycan biosynthesis class S protein- Family
C [auth K]PF01650Peptidase C13 family (Peptidase_C13)Peptidase C13 familyMembers of this family are asparaginyl peptidases [1]. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expr ...Members of this family are asparaginyl peptidases [1]. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation [2]. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterised as a 'haemoglobinase', but this term is probably incorrect [2]. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed [3].
Domain
B [auth G]PF04114Gaa1-like, GPI transamidase component (Gaa1)Gaa1-like, GPI transamidase component- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth U]Phosphatidylinositol glycan anchor biosynthesis class U protein,GFP-like fluorescent chromoprotein cFP484
G [auth P]Met-Ser-Ser peptide---
E [auth T]GPI transamidase component PIG-T,GFP-like fluorescent chromoprotein cFP484- -
D [auth S]GPI transamidase component PIG-S,GFP-like fluorescent chromoprotein cFP484-
C [auth K]GPI-anchor transamidase,GFP-like fluorescent chromoprotein cFP484
B [auth G]Glycosylphosphatidylinositol anchor attachment 1 protein,GFP-like fluorescent chromoprotein cFP484
A [auth D]UL16-binding protein 2,GFP-like fluorescent chromoprotein cFP484

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth U]IPR009600GPI transamidase subunit PIG-UFamily
F [auth U]IPR000786Green fluorescent protein, GFPFamily
F [auth U]IPR011584Green fluorescent protein-relatedFamily
F [auth U]IPR009017Green fluorescent proteinHomologous Superfamily
E [auth T]IPR000786Green fluorescent protein, GFPFamily
E [auth T]IPR011584Green fluorescent protein-relatedFamily
E [auth T]IPR009017Green fluorescent proteinHomologous Superfamily
D [auth S]IPR019540Phosphatidylinositol-glycan biosynthesis class S proteinFamily
D [auth S]IPR000786Green fluorescent protein, GFPFamily
D [auth S]IPR011584Green fluorescent protein-relatedFamily
D [auth S]IPR009017Green fluorescent proteinHomologous Superfamily
C [auth K]IPR028361GPI-anchor transamidaseFamily
C [auth K]IPR001096Peptidase C13, legumainFamily
C [auth K]IPR000786Green fluorescent protein, GFPFamily
C [auth K]IPR011584Green fluorescent protein-relatedFamily
C [auth K]IPR009017Green fluorescent proteinHomologous Superfamily
B [auth G]IPR007246GPI transamidase component Gaa1Family
B [auth G]IPR000786Green fluorescent protein, GFPFamily
B [auth G]IPR011584Green fluorescent protein-relatedFamily
B [auth G]IPR009017Green fluorescent proteinHomologous Superfamily
A [auth D]IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A [auth D]IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A [auth D]IPR011161MHC class I-like antigen recognition-likeDomain
A [auth D]IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A [auth D]IPR000786Green fluorescent protein, GFPFamily
A [auth D]IPR011584Green fluorescent protein-relatedFamily
A [auth D]IPR009017Green fluorescent proteinHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth U]Q9H490
D [auth S]Q96S52
C [auth K]Q92643
B [auth G]O43292
A [auth D]Q9BZM5