Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2021-05-27)
ASCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2021-05-27)
FSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2021-05-27)
BSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2021-05-27)
CSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2021-05-27)
GSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2021-05-27)
DSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2021-05-27)
HSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2021-05-27)
L [auth N]SCOP2B SuperfamilyChromo domain-like8089214 3000161 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
L [auth N]PF11717RNA binding activity-knot of a chromodomain (Tudor-knot)RNA binding activity-knot of a chromodomain- Family
L [auth N]PF22732MSL3 chromodomain-like (MSL3_chromo-like)MSL3 chromodomain-likeThis domain is found in Male-specific lethal-3 (MSL3) and other related proteins such as MRG15 transcription factor. MSL3 resides in the MSL (male-specific lethal) complex, which upregulates transcription by spreading the histone H4 Lys16 acetyl mark ...This domain is found in Male-specific lethal-3 (MSL3) and other related proteins such as MRG15 transcription factor. MSL3 resides in the MSL (male-specific lethal) complex, which upregulates transcription by spreading the histone H4 Lys16 acetyl mark. The MSL3 chromo domain implicated in chromatin targeting and its deletion leads to the disruption of MSL targeting. The MRG15 chromo domain is involved in chromatin remodelling and transcription regulation. This domain consists of a SH3-like beta-barrel and a long alpha-helix.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E
Histone H3 -
B, F
Histone H4
C, G
Histone H2A -
D, H
Histone H2B -
DNA (164-MER)---
DNA (165-MER)---
K [auth M]Rco1-ABR
L [auth N]Chromatin modification-related protein EAF3-