8I8B

Outer shell and inner layer structures of Autographa californica multiple nucleopolyhedrovirus (AcMNPV)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
I [auth E]	PF04913	Baculovirus Y142 protein (Baculo_Y142)	Baculovirus Y142 protein	-	Family
H [auth D]	PF05054	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein (AcMNPV_Ac109)	Autographa californica nuclear polyhedrosis virus (AcMNPV) protein	-	Family
N [auth J]	PF05152	Protein of unknown function (DUF705) (DUF705)	Protein of unknown function (DUF705)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth W], B [auth X], C [auth Y], D [auth Z]	Major viral capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host cell nuclear matrix host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host cell nuclear part host intracellular organelle viral capsid virion component
I [auth E]	Early 49 Daa protein	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral nucleocapsid viral capsid virion component host cell cytoplasm
J [auth F], K [auth G]	P40	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle virion component
L [auth H], M [auth I]	Occlusion-derived virus envelope/capsid protein	-	-	virion component viral membrane viral envelope membrane cellular anatomical entity virion membrane
E [auth A], F [auth B], G [auth C]	Viral capsid associated protein	DNA binding binding organic cyclic compound binding nucleic acid binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	exit of virus from host cell nucleus by nuclear egress exit from host cell biological process involved in interspecies interaction between organisms exit of virus from host cell nucleus biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
H [auth D]	AcOrf-109 peptide	-	virion assembly viral process viral capsid assembly viral life cycle nuclear capsid assembly intracellular transport of virus transport of virus transport of viral material towards nucleus	host cellular component host cell cellular anatomical entity host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle host cell cytoplasm
N [auth J]	38K	-	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle virion component host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth W], B [auth X], C [auth Y], D [auth Z]	IPR007589	Baculovirus major capsid protein VP39	Family
I [auth E]	IPR006997	Baculovirus Y142 protein	Family
J [auth F], K [auth G]	IPR008562	Autographa californica nuclear polyhedrosis virus (AcMNPV), C42	Family
L [auth H], M [auth I]	IPR007978	Baculovirus occlusion-derived virus envelope EC27	Family
E [auth A], F [auth B], G [auth C]	IPR009893	Nucleopolyhedrovirus capsid P80/P87	Family
H [auth D]	IPR007748	Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf109	Family
N [auth J]	IPR007827	Protein of unknown function DUF694	Family
N [auth J]	IPR036412	HAD-like superfamily	Homologous Superfamily
N [auth J]	IPR023214	HAD superfamily	Homologous Superfamily
N [auth J]	IPR010033	HAD-superfamily phosphatase, subfamily IIIC	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.