8HNI | pdb_00008hni

hnRNP A2/B1 RRMs in complex with telomeric DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
S [auth G]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
T [auth H]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
U [auth I]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
V [auth J]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
W [auth K]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)
X [auth L]	SCOP2B Superfamily	RNA-binding domain, RBD	8033596	3000110	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MIF4G	e8hniA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
B	MIF4G	e8hniB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
C	MIF4G	e8hniC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
D	MIF4G	e8hniD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E	MIF4G	e8hniE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F	MIF4G	e8hniF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
S [auth G]	MIF4G	e8hniG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
T [auth H]	MIF4G	e8hniH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
U [auth I]	MIF4G	e8hniI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
V [auth J]	MIF4G	e8hniJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
W [auth K]	MIF4G	e8hniK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
X [auth L]	MIF4G	e8hniL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	PF00076	RNA recognition motif (RRM_1)	RNA recognition motif	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...	The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G [auth M], H [auth N], I [auth O], J [auth P], K [auth Q], G [auth M], H [auth N], I [auth O], J [auth P], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth V], Q [auth W], R [auth X]	DNA (5'-D(PTPAPGPGPGPTPTPAPGPGPGPT)-3')	-	-	-
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	Heterogeneous nuclear ribonucleoproteins A2/B1	protein-RNA adaptor activity protein-macromolecule adaptor activity N6-methyladenosine-containing RNA reader activity molecular adaptor activity molecular condensate scaffold activity mRNA 3'-UTR binding RNA binding binding nucleic acid binding mRNA binding regulatory RNA binding miRNA binding sequence-specific DNA binding DNA binding protein-RNA adaptor activity protein-macromolecule adaptor activity N6-methyladenosine-containing RNA reader activity molecular adaptor activity molecular condensate scaffold activity mRNA 3'-UTR binding RNA binding binding nucleic acid binding mRNA binding regulatory RNA binding miRNA binding sequence-specific DNA binding DNA binding G-rich strand telomeric DNA binding sequence-specific single stranded DNA binding single-stranded telomeric DNA binding single-stranded DNA binding telomeric repeat DNA binding protein binding DNA polymerase binding enzyme binding identical protein binding	positive regulation of organelle organization regulation of telomere maintenance regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process telomere organization regulation of primary metabolic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of telomere maintenance via telomere lengthening positive regulation of macromolecule metabolic process positive regulation of organelle organization regulation of telomere maintenance regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process telomere organization regulation of primary metabolic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of telomere maintenance via telomere lengthening positive regulation of macromolecule metabolic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of biological process positive regulation of telomere maintenance biological regulation chromosome organization primary metabolic process DNA metabolic process regulation of chromosome organization regulation of macromolecule metabolic process regulation of telomere maintenance via telomere lengthening nucleic acid metabolic process regulation of organelle organization positive regulation of chromosome organization telomere maintenance organelle organization positive regulation of DNA metabolic process cellular process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport DNA geometric change DNA conformation change cellular localization nucleocytoplasmic transport nuclear transport intercellular transport mRNA export from nucleus establishment of localization in cell nuclear export intracellular transport gene expression macromolecule biosynthetic process RNA export from nucleus biosynthetic process RNA metabolic process nucleobase-containing compound biosynthetic process mRNA processing mRNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process RNA processing miRNA transport RNA splicing RNA splicing, via transesterification reactions mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of metabolic process regulatory ncRNA processing regulatory ncRNA-mediated gene silencing primary miRNA processing regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process miRNA processing regulation of macromolecule biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix membrane catalytic step 2 spliceosome membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle nuclear lumen nuclear matrix membrane catalytic step 2 spliceosome protein-containing complex catalytic complex nuclear protein-containing complex spliceosomal complex ribonucleoprotein complex extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytoplasm nucleoplasm Cajal body intracellular membraneless organelle ribonucleoprotein granule nuclear body membraneless organelle supramolecular complex nuclear ribonucleoprotein granule chromosome chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	IPR000504	RNA recognition motif domain	Domain
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	IPR021662	Heterogeneous nuclear ribonucleoprotein A1/A2, C-terminal	Domain
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	IPR034486	hnRNP A2/B1, RNA recognition motif 1	Domain
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E, A, B, C, D, E, F, S [auth G], T [auth H], U [auth I], V [auth J], W [auth K], X [auth L]	: P22626	adult T-cell leukemia/lymphoma inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 2 inclusion body myopathy with Paget disease of bone and frontotemporal dementia Pick disease primitive neuroectodermal tumor acute T cell leukemia atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma myopathy pancreatic ductal adenocarcinoma plasma cell myeloma progressive supranuclear palsy glioblastoma inclusion body myopathy with Paget disease of bone and frontotemporal dementia type 1 adult T-cell leukemia/lymphoma inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 2 inclusion body myopathy with Paget disease of bone and frontotemporal dementia Pick disease primitive neuroectodermal tumor acute T cell leukemia atypical teratoid rhabdoid tumor large cell medulloblastoma malignant glioma myopathy pancreatic ductal adenocarcinoma plasma cell myeloma progressive supranuclear palsy glioblastoma inclusion body myopathy with Paget disease of bone and frontotemporal dementia type 1 lymphoplasmacytic lymphoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm polycystic ovary syndrome astrocytic tumor juvenile dermatomyositis malignant ependymoma medulloblastoma ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.