8HFR

NPC-trapped pre-60S particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth g2]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2021-05-27)
L [auth cC]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2021-05-27)
M [auth CD]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2021-05-27)
O [auth UF]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2021-05-27)
GA [auth EX]SCOP2B SuperfamilyNTF2-like 8034031 3000472 SCOP2B (2021-05-27)
FA [auth CW]SCOP2B SuperfamilyNTF2-like 8034031 3000472 SCOP2B (2021-05-27)
W [auth AN]SCOP2B SuperfamilyNTF2-like 8034031 3000472 SCOP2B (2021-05-27)
DA [auth YU]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2021-05-27)
RA [auth li]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2021-05-27)
VA [auth sm]SCOP2B SuperfamilyTMA16-like 8092815 3002626 SCOP2B (2021-05-27)
ZA [auth Zq]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2021-05-27)
IB [auth Ez]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2021-05-27)
N [auth yE]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2021-05-27)
AA [auth FR]SCOP2B SuperfamilyNTF2-like 8034032 3000472 SCOP2B (2021-05-27)
CB [auth Bt]SCOP2B SuperfamilyNTF2-like 8034032 3000472 SCOP2B (2021-05-27)
T [auth DK]SCOP2B SuperfamilyNTF2-like 8034032 3000472 SCOP2B (2021-05-27)
U [auth LL]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2021-05-27)
X [auth DO]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2021-05-27)
X [auth DO]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2021-05-27)
Y [auth RP]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2021-05-27)
C [auth b3]SCOP2B SuperfamilyRibosomal protein L29e 8053045 3002157 SCOP2B (2021-05-27)
HA [auth nY]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2021-05-27)
JA [auth ia]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2021-05-27)
LA [auth Xc]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8095962 3000210 SCOP2B (2021-05-27)
QA [auth jh]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2021-05-27)
SA [auth Hj]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2021-05-27)
TA [auth Qk]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2021-05-27)
XA [auth No]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8082481 3000210 SCOP2B (2021-05-27)
E [auth V5]SCOP2B Superfamily50S Ribosomal protein L14-like 8102130 3000433 SCOP2B (2021-05-27)
AB [auth kr]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2021-05-27)
DB [auth Gu]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2021-05-27)
DB [auth Gu]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke 8052916 3002152 SCOP2B (2021-05-27)
EB [auth Pv]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2021-05-27)
FB [auth aw]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2021-05-27)
HB [auth Jy]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2021-05-27)
F [auth O6]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2021-05-27)
G [auth f7]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2021-05-27)
H [auth F8]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth g2]PF01199e8hfrg21 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
L [auth cC]PF01248e8hfrcC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
M [auth CD]PF00297e8hfrCD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
O [auth UF]PF01776e8hfrUF1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
P [auth dG]PF01198e8hfrdG1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
GA [auth EX]F_UNCLASSIFIEDe8hfrEX2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: F_UNCLASSIFIEDECOD (1.6)
GA [auth EX]PF22602e8hfrEX1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF22602ECOD (1.6)
FA [auth CW]F_UNCLASSIFIEDe8hfrCW2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: F_UNCLASSIFIEDECOD (1.6)
FA [auth CW]PF22602e8hfrCW1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF22602ECOD (1.6)
FA [auth CW]PF18444e8hfrCW3 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF18444ECOD (1.6)
W [auth AN]F_UNCLASSIFIEDe8hfrAN2 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: F_UNCLASSIFIEDECOD (1.6)
W [auth AN]PF22602e8hfrAN1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF22602ECOD (1.6)
Z [auth MQ]PF00467,PF01929e8hfrMQ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
DA [auth YU]PF16906e8hfrYU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
IA [auth SZ]F_UNCLASSIFIEDe8hfrSZ2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
IA [auth SZ]PF01775e8hfrSZ1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
PA [auth Wg]PF00466e8hfrWg1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
PA [auth Wg]PF17777e8hfrWg2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
RA [auth li]PF00832e8hfrli1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
VA [auth sm]PF11176e8hfrsm1 A: alpha arraysX: yeast protein YOR252W (From Topology)H: yeast protein YOR252W (From Topology)T: yeast protein YOR252WF: PF11176ECOD (1.6)
ZA [auth Zq]PF01777e8hfrZq1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01777ECOD (1.6)
IB [auth Ez]PF14204,PF17144e8hfrEz1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
A [auth h1]PF00831e8hfrh11 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
N [auth yE]PF01912e8hfryE1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
Q [auth eH]PF01655e8hfreH1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
AA [auth FR]PF10429e8hfrFR1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF10429ECOD (1.6)
CB [auth Bt]PF10429e8hfrBt1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF10429ECOD (1.6)
T [auth DK]PF10429e8hfrDK1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF10429ECOD (1.6)
U [auth LL]PF01294e8hfrLL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
V [auth KM]PF00298e8hfrKM1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
V [auth KM]PF03946e8hfrKM2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
X [auth DO]PF00573e8hfrDO1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
X [auth DO]PF14374e8hfrDO2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
Y [auth RP]PF01280e8hfrRP1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Y [auth RP]PF01280e8hfrRP2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
BA [auth mS]PF00935e8hfrmS1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
C [auth b3]PF01779e8hfrb31 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
EA [auth vV]PF21192e8hfrvV1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF21192ECOD (1.6)
EA [auth vV]PF21193e8hfrvV3 A: beta barrelsX: SH3H: SH3T: SH3F: PF21193ECOD (1.6)
EA [auth vV]PF04981e8hfrvV2 A: a+b two layersX: 60S ribosomal export protein NMD3 a+b domain (From Topology)H: 60S ribosomal export protein NMD3 a+b domain (From Topology)T: 60S ribosomal export protein NMD3 a+b domainF: PF04981ECOD (1.6)
HA [auth nY]PF01780e8hfrnY1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
JA [auth ia]PF01158e8hfria1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
KA [auth Ib]PF00347e8hfrIb2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
LA [auth Xc]PF00276,PF03939e8hfrXc1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
D [auth B4]PF00181e8hfrB42 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth B4]PF03947e8hfrB41 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
QA [auth jh]PF01907e8hfrjh1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
SA [auth Hj]PF01248e8hfrHj1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
TA [auth Qk]PF17135e8hfrQk1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
UA [auth Tl]PF01157e8hfrTl1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
XA [auth No]PF00827e8hfrNo1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
E [auth V5]PF00238e8hfrV51 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
AB [auth kr]PF01781e8hfrkr1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
BB [auth As]PF00687e8hfrAs1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
BB [auth As]PF00687e8hfrAs2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
DB [auth Gu]PF00327,PF08079e8hfrGu1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
EB [auth Pv]PF00237e8hfrPv1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
FB [auth aw]PF00828e8hfraw1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
GB [auth ox]PF12171e8hfrox1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: PF12171ECOD (1.6)
HB [auth Jy]PF00281,PF00673e8hfrJy1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
F [auth O6]PF00572e8hfrO61 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
G [auth f7]PF01247e8hfrf71 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
H [auth F8]PF01159e8hfrF81 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth UF]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
FA [auth CW],
GA [auth EX],
W [auth AN]
PF18444RNA recognition motif (RRM_9)RNA recognition motifThe Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although s ...The Mex67-Mtr2 complex (TAP-p15 or NXF1-NXT1 in metazoans) is the principal mRNA export factor in Saccharomyces cerevisiae. Mex67 is a member of the NXF family of proteins and has conserved homologs through eukaryotes from yeast to humans. Although sequence conservation is poor between S. cerevisiae Mex67 and Homo sapiens NXF1, they do show functional complementarity. Mex67 and TAP/NXF1 are modular proteins that contain four structural domains: an N-terminal RNA recognition motif (RRM), a leucine rich repeat (LRR) domain, a nuclear transport factor 2-like domain (NTF2L) and an ubiquitin-associated domain (UBA). This entry describes the N-terminal RNA recognition motif (RRM) found in Mex67 proteins [1].
Domain
FA [auth CW],
GA [auth EX],
W [auth AN]
PF22602Nuclear RNA export factor, NTF2 domain (NXF_NTF2)Nuclear RNA export factor, NTF2 domainThis entry represents the NTF2 domain of nuclear RNA export factors (NFX), proteins that are involved in the nuclear export of mRNAs [1-5].Domain
Z [auth MQ]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Z [auth MQ]PF00467KOW motif (KOW)KOW motif- Family
DA [auth YU]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
DA [auth YU]PF00467KOW motif (KOW)KOW motif- Family
IA [auth SZ]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
AA [auth FR],
CB [auth Bt],
T [auth DK]
PF10429Nuclear pore RNA shuttling protein Mtr2 (Mtr2)Nuclear pore RNA shuttling protein Mtr2Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucle ...Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore [1].
Domain
U [auth LL]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
V [auth KM]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
V [auth KM]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
X [auth DO]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
X [auth DO]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
Y [auth RP]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
D [auth B4]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth B4]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
E [auth V5]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
F [auth O6]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth F8]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth g2]60S ribosomal protein L34-A
L [auth cC]60S ribosomal protein L30
M [auth CD]60S ribosomal protein L3
O [auth UF]60S ribosomal protein L22-A
P [auth dG]60S ribosomal protein L31-A
R [auth xI]Shuttling pre-60S factor ECM1-
FA [auth CW],
GA [auth EX],
W [auth AN]
mRNA export factor MEX67
Z [auth MQ]60S ribosomal protein L14-A
DA [auth YU]60S ribosomal protein L26-A
IA [auth SZ]60S ribosomal protein L20-A
PA [auth Wg]Ribosome assembly factor MRT4
RA [auth li]60S ribosomal protein L39
VA [auth sm]Translation machinery-associated protein 16- -
ZA [auth Zq]60S ribosomal protein L27-A
IB [auth Ez]60S ribosomal protein L5
A [auth h1]60S ribosomal protein L35-A
J [auth rA]Nucleolar GTP-binding protein 1
K [auth tB]Ribosome biogenesis protein RLP24
N [auth yE]Eukaryotic translation initiation factor 6
Q [auth eH]60S ribosomal protein L32
S [auth qJ]Ribosome biogenesis protein ALB1-
AA [auth FR],
CB [auth Bt],
T [auth DK]
mRNA transport regulator MTR2-
U [auth LL]60S ribosomal protein L13-A
V [auth KM]YEAST 60S ribosomal protein L12-A
X [auth DO]60S ribosomal protein L4-A
Y [auth RP]60S ribosomal protein L19-A
BA [auth mS]60S ribosomal protein L42-A
CA [auth pT]Probable metalloprotease ARX1
C [auth b3]60S ribosomal protein L29
EA [auth vV]60S ribosomal export protein NMD3
HA [auth nY]60S ribosomal protein L43-A
JA [auth ia]60S ribosomal protein L36-A
KA [auth Ib]60S ribosomal protein L9-A
LA [auth Xc]60S ribosomal protein L25
MA [auth xd]Ribosome biogenesis protein NSA2-
NA [auth 1e]25S ribosomal RNA---
OA [auth 2f]5S ribosomal RNA---
D [auth B4]60S ribosomal protein L2-A
QA [auth jh]60S ribosomal protein L37-A
SA [auth Hj]60S ribosomal protein L8-A
TA [auth Qk]60S ribosomal protein L18-A
UA [auth Tl]60S ribosomal protein L21-A
WA [auth 3n]5.8S ribosomal RNA---
XA [auth No]60S ribosomal protein L15-A
YA [auth zp]UPF0642 protein YBL028C- -
E [auth V5]60S ribosomal protein L23-A
AB [auth kr]60S ribosomal protein L38
BB [auth As]YEAST 60S ribosomal protein L1-A
DB [auth Gu]60S ribosomal protein L7-A
EB [auth Pv]60S ribosomal protein L17-A
FB [auth aw]60S ribosomal protein L28
GB [auth ox]Bud site selection protein 20
HB [auth Jy]60S ribosomal protein L11-A
F [auth O6]60S ribosomal protein L16-A
G [auth f7]60S ribosomal protein L33-A
H [auth F8]60S ribosomal protein L6-A
I [auth v9]Nucleolar GTP-binding protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth g2]IPR008195Large ribosomal subunit protein eL34Family
B [auth g2]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
L [auth cC]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
L [auth cC]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth cC]IPR039109Large ribosomal subunit protein eL30-likeFamily
L [auth cC]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
M [auth CD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
M [auth CD]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
M [auth CD]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
M [auth CD]IPR000597Large ribosomal subunit protein uL3Family
M [auth CD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
O [auth UF]IPR002671Large ribosomal subunit protein eL22Family
O [auth UF]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
P [auth dG]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
P [auth dG]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
P [auth dG]IPR000054Large ribosomal subunit protein eL31Family
R [auth xI]IPR022784Ribosome biogenesis protein Alb1Family
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR030217Nuclear RNA export factorFamily
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR032710NTF2-like domain superfamilyHomologous Superfamily
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR001611Leucine-rich repeatRepeat
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR018222Nuclear transport factor 2, eukaryoteDomain
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR040736Mex67, RNA recognition motifDomain
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR009060UBA-like superfamilyHomologous Superfamily
FA [auth CW],
GA [auth EX],
W [auth AN]
IPR005637TAP C-terminal (TAP-C) domainDomain
Z [auth MQ]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth MQ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth MQ]IPR039660Large ribosomal subunit protein eL14Family
Z [auth MQ]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
Z [auth MQ]IPR002784Large ribosomal subunit protein eL14 domainDomain
Z [auth MQ]IPR005824KOWDomain
DA [auth YU]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
DA [auth YU]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
DA [auth YU]IPR005824KOWDomain
DA [auth YU]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth YU]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
DA [auth YU]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IA [auth SZ]IPR028877Large ribosomal subunit protein eL20Family
IA [auth SZ]IPR023573Large ribosomal subunit protein eL20 domainDomain
IA [auth SZ]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
PA [auth Wg]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
PA [auth Wg]IPR001790Large ribosomal subunit protein uL10Family
PA [auth Wg]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
PA [auth Wg]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
PA [auth Wg]IPR033867Ribosome assembly factor Mrt4Family
RA [auth li]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
RA [auth li]IPR000077Large ribosomal subunit protein eL39Family
RA [auth li]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
VA [auth sm]IPR038356Tma16 superfamilyHomologous Superfamily
VA [auth sm]IPR021346Translation machinery-associated protein 16Family
ZA [auth Zq]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
ZA [auth Zq]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
ZA [auth Zq]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
ZA [auth Zq]IPR001141Large ribosomal subunit protein eL27Family
ZA [auth Zq]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IB [auth Ez]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IB [auth Ez]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
A [auth h1]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
A [auth h1]IPR001854Large ribosomal subunit protein uL29Family
A [auth h1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
A [auth h1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
J [auth rA]IPR024926Nucleolar GTP-binding protein 1Family
J [auth rA]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
J [auth rA]IPR012973NOG, C-terminalDomain
J [auth rA]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
J [auth rA]IPR041623NOG1, N-terminal helical domainDomain
J [auth rA]IPR006073GTP binding domainDomain
J [auth rA]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K [auth tB]IPR011017TRASH domainDomain
K [auth tB]IPR000988Large ribosomal subunit protein eL24-relatedFamily
K [auth tB]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
N [auth yE]IPR002769Translation initiation factor IF6Family
Q [auth eH]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
Q [auth eH]IPR001515Large ribosomal subunit protein eL32Family
Q [auth eH]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
S [auth qJ]IPR022784Ribosome biogenesis protein Alb1Family
AA [auth FR],
CB [auth Bt],
T [auth DK]
IPR032710NTF2-like domain superfamilyHomologous Superfamily
AA [auth FR],
CB [auth Bt],
T [auth DK]
IPR045875Nuclear transport factor 2Family
AA [auth FR],
CB [auth Bt],
T [auth DK]
IPR019488Nuclear pore RNA shuttling protein Mtr2Family
U [auth LL]IPR001380Large ribosomal subunit protein eL13Family
U [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
V [auth KM]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
V [auth KM]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
V [auth KM]IPR000911Ribosomal protein uL11Family
V [auth KM]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
V [auth KM]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
V [auth KM]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
X [auth DO]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
X [auth DO]IPR002136Large ribosomal subunit protein uL4Family
X [auth DO]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
X [auth DO]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
X [auth DO]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
Y [auth RP]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Y [auth RP]IPR039547Large ribosomal subunit protein eL19Family
Y [auth RP]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Y [auth RP]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Y [auth RP]IPR000196Large ribosomal subunit protein eL19 domainDomain
Y [auth RP]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
BA [auth mS]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth mS]IPR000552Large ribosomal subunit protein eL42Family
CA [auth pT]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CA [auth pT]IPR047113Proliferation-associated protein 2G4/ARX1Family
CA [auth pT]IPR036005Creatinase/aminopeptidase-likeHomologous Superfamily
C [auth b3]IPR002673Large ribosomal subunit protein eL29Family
EA [auth vV]IPR007064Nmd3, N-terminalDomain
EA [auth vV]IPR039768Ribosomal export protein Nmd3Family
EA [auth vV]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
EA [auth vV]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
HA [auth nY]IPR002674Large ribosomal subunit protein eL43Family
HA [auth nY]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth nY]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JA [auth ia]IPR000509Large ribosomal subunit protein eL36Family
JA [auth ia]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
KA [auth Ib]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
KA [auth Ib]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
KA [auth Ib]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
KA [auth Ib]IPR000702Large ribosomal subunit protein uL6-likeFamily
LA [auth Xc]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
LA [auth Xc]IPR013025Large ribosomal subunit protein uL23-likeFamily
LA [auth Xc]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LA [auth Xc]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LA [auth Xc]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
MA [auth xd]IPR039411Ribosomal biogenesis NSA2 familyFamily
MA [auth xd]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
D [auth B4]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth B4]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth B4]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth B4]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth B4]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth B4]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth B4]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth B4]IPR002171Large ribosomal subunit protein uL2Family
QA [auth jh]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
QA [auth jh]IPR001569Large ribosomal subunit protein eL37Family
QA [auth jh]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
QA [auth jh]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SA [auth Hj]IPR001921Large ribosomal subunit protein eL8Family
SA [auth Hj]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
SA [auth Hj]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
SA [auth Hj]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
SA [auth Hj]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
TA [auth Qk]IPR021131Large ribosomal subunit protein uL15/eL18Domain
TA [auth Qk]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
TA [auth Qk]IPR000039Large ribosomal subunit protein eL18Family
TA [auth Qk]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
UA [auth Tl]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
UA [auth Tl]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
UA [auth Tl]IPR001147Large ribosomal subunit protein eL21Family
UA [auth Tl]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth No]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
XA [auth No]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
XA [auth No]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
XA [auth No]IPR000439Large ribosomal subunit protein eL15Family
YA [auth zp]IPR019434Domain of unknown function DUF2423Domain
E [auth V5]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
E [auth V5]IPR000218Large ribosomal subunit protein uL14Family
E [auth V5]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AB [auth kr]IPR002675Large ribosomal subunit protein eL38Family
AB [auth kr]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
BB [auth As]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
BB [auth As]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
BB [auth As]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
BB [auth As]IPR002143Large ribosomal subunit protein uL1Family
BB [auth As]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
DB [auth Gu]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
DB [auth Gu]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DB [auth Gu]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
DB [auth Gu]IPR039699Large ribosomal subunit protein uL30Family
DB [auth Gu]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
DB [auth Gu]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DB [auth Gu]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
EB [auth Pv]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
EB [auth Pv]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
EB [auth Pv]IPR001063Large ribosomal subunit protein uL22Family
EB [auth Pv]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
FB [auth aw]IPR021131Large ribosomal subunit protein uL15/eL18Domain
FB [auth aw]IPR030878Large ribosomal subunit protein uL15Family
FB [auth aw]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
FB [auth aw]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GB [auth ox]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
GB [auth ox]IPR013087Zinc finger C2H2-typeDomain
GB [auth ox]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
GB [auth ox]IPR022755Zinc finger, double-stranded RNA bindingDomain
HB [auth Jy]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
HB [auth Jy]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
HB [auth Jy]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
HB [auth Jy]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
HB [auth Jy]IPR002132Large ribosomal subunit protein uL5Family
F [auth O6]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
F [auth O6]IPR005822Large ribosomal subunit protein uL13Family
F [auth O6]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
F [auth O6]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
G [auth f7]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
G [auth f7]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth f7]IPR001780Large ribosomal subunit protein eL33Family
G [auth f7]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
H [auth F8]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth F8]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth F8]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth F8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth F8]IPR000915Large ribosomal subunit protein eL6Family
I [auth v9]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
I [auth v9]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
I [auth v9]IPR006073GTP binding domainDomain
I [auth v9]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
I [auth v9]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
I [auth v9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily