8H1R
Crystal structure of LptDE-YifL complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | LptD-like barrel | 8053495 | 3002195 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | LptD-like barrel | 8053495 | 3002195 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TolB N-terminal domain-like | 8053485 | 3000482 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TolB N-terminal domain-like | 8053485 | 3000482 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04453 | e8h1rA2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: LPS-assembly protein LptD (From Topology) | T: LPS-assembly protein LptD | F: PF04453 | ECOD (1.6) |
A | PF03968 | e8h1rA1 | A: beta meanders | X: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | H: Periplasmic lipopolysaccharide transport protein LptA (YhbN) (From Topology) | T: Periplasmic lipopolysaccharide transport protein LptA (YhbN) | F: PF03968 | ECOD (1.6) |
B | PF04390 | e8h1rB1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04390 | ECOD (1.6) |
E | PF04390 | e8h1rE1 | A: a/b three-layered sandwiches | X: TolB, N-terminal domain (From Topology) | H: TolB, N-terminal domain (From Topology) | T: TolB, N-terminal domain | F: PF04390 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03968 | LptA/(LptD N-terminal domain) LPS transport protein (LptD_N) | LptA/(LptD N-terminal domain) LPS transport protein | This family of proteins are involved in lipopolysaccharide transport across the gram negative inner and outer membranes. The type examples for this family are E. coli LptA Swiss:P0ADV1 and the N-terminal domain of LptD Swiss:P31554. | Domain | |
PF04453 | LPS transport system D (LptD) | LPS transport system D | - | Family | |
PF04390 | Lipopolysaccharide-assembly (LptE) | Lipopolysaccharide-assembly | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR007543 | LptD, C-terminal | Domain | |
IPR020889 | LPS-assembly protein LptD | Family | |
IPR050218 | Lipopolysaccharide Assembly Protein LptD | Family | |
IPR005653 | Organic solvent tolerance-like, N-terminal | Domain | |
IPR007485 | LPS-assembly lipoprotein LptE | Family | |
IPR032831 | Prokaryotic lipoprotein-attachment site | Conserved Site |