8GA8
Structure of the yeast (HDAC) Rpd3L complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth B] | PF00850 | e8ga8B1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: PF00850 | ECOD (1.6) |
H [auth E] | PF00850 | e8ga8E1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: PF00850 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth H] | PF08598 | Sds3-like (Sds3) | Sds3-like | - | Family |
B [auth A], J [auth D] | PF08295 | Sin3 family co-repressor (Sin3_corepress) | Sin3 family co-repressor | This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [1]. | Domain |
B [auth A], J [auth D] | PF02671 | Paired amphipathic helix repeat (PAH) | Paired amphipathic helix repeat | - | Repeat |
B [auth A], J [auth D] | PF16879 | C-terminal domain of Sin3a protein (Sin3a_C) | C-terminal domain of Sin3a protein | - | Family |
C [auth J] | PF13867 | Sin3 binding region of histone deacetylase complex subunit SAP30 (SAP30_Sin3_bdg) | Sin3 binding region of histone deacetylase complex subunit SAP30 | - | Family |
E [auth M] | PF08595 | RXT2-like, N-terminal (RXT2_N) | RXT2-like, N-terminal | - | Family |
G [auth B], H [auth E] | PF00850 | Histone deacetylase domain (Hist_deacetyl) | Histone deacetylase domain | Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ... | Domain |
I [auth K] | PF08642 | Histone deacetylation protein Rxt3 (Rxt3) | Histone deacetylation protein Rxt3 | - | Family |