8FYW | pdb_00008fyw

Cryo-EM Structure of genome containing AAV2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth z]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XA [auth x]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
VSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
USCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RA [auth r]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KA [auth k]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HB [auth 8]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HA [auth h]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GB [auth 7]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FB [auth 6]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EB [auth 5]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DB [auth 4]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DA [auth d]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CB [auth 3]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BB [auth 2]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BA [auth b]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AB [auth 1]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
AA [auth a]SCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8041416 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth z]Glyco_hydro_43e8fywz1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
ZGlyco_hydro_43e8fywZ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
YA [auth y]Glyco_hydro_43e8fywy1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
YGlyco_hydro_43e8fywY1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
XA [auth x]Glyco_hydro_43e8fywx1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
XGlyco_hydro_43e8fywX1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
WA [auth w]Glyco_hydro_43e8fyww1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
WGlyco_hydro_43e8fywW1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
VA [auth v]Glyco_hydro_43e8fywv1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
VGlyco_hydro_43e8fywV1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
UA [auth u]Glyco_hydro_43e8fywu1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
UGlyco_hydro_43e8fywU1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
TA [auth t]Glyco_hydro_43e8fywt1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
TGlyco_hydro_43e8fywT1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
SA [auth s]Glyco_hydro_43e8fyws1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
SGlyco_hydro_43e8fywS1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
RA [auth r]Glyco_hydro_43e8fywr1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
RGlyco_hydro_43e8fywR1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
QA [auth q]Glyco_hydro_43e8fywq1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
QGlyco_hydro_43e8fywQ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
PA [auth p]Glyco_hydro_43e8fywp1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
PGlyco_hydro_43e8fywP1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
OA [auth o]Glyco_hydro_43e8fywo1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
OGlyco_hydro_43e8fywO1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
NA [auth n]Glyco_hydro_43e8fywn1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
NGlyco_hydro_43e8fywN1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
MA [auth m]Glyco_hydro_43e8fywm1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
MGlyco_hydro_43e8fywM1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
LA [auth l]Glyco_hydro_43e8fywl1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
LGlyco_hydro_43e8fywL1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
KA [auth k]Glyco_hydro_43e8fywk1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
KGlyco_hydro_43e8fywK1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
JA [auth j]Glyco_hydro_43e8fywj1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
JGlyco_hydro_43e8fywJ1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
IA [auth i]Glyco_hydro_43e8fywi1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
IGlyco_hydro_43e8fywI1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
HB [auth 8]Glyco_hydro_43e8fyw81 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
HA [auth h]Glyco_hydro_43e8fywh1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
HGlyco_hydro_43e8fywH1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
GB [auth 7]Glyco_hydro_43e8fyw71 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
GA [auth g]Glyco_hydro_43e8fywg1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
GGlyco_hydro_43e8fywG1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
FB [auth 6]Glyco_hydro_43e8fyw61 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
FA [auth f]Glyco_hydro_43e8fywf1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
FGlyco_hydro_43e8fywF1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
EB [auth 5]Glyco_hydro_43e8fyw51 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
EA [auth e]Glyco_hydro_43e8fywe1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
EGlyco_hydro_43e8fywE1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
DB [auth 4]Glyco_hydro_43e8fyw41 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
DA [auth d]Glyco_hydro_43e8fywd1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
DGlyco_hydro_43e8fywD1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
CB [auth 3]Glyco_hydro_43e8fyw31 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
CA [auth c]Glyco_hydro_43e8fywc1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
CGlyco_hydro_43e8fywC1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
BB [auth 2]Glyco_hydro_43e8fyw21 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
BA [auth b]Glyco_hydro_43e8fywb1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
BGlyco_hydro_43e8fywB1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
AB [auth 1]Glyco_hydro_43e8fyw11 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
AA [auth a]Glyco_hydro_43e8fywa1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Glyco_hydro_43ECOD (v294.2)
Ae8fywA1 A: beta barrelsX: RNase A-likeH: RNase A-likeT: RNase A-likeF:ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Capsid protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily