8FVJ
Dimeric form of HIV-1 Vif in complex with human CBF-beta, ELOB, ELOC, and CUL5
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 0] | SCOP2B Superfamily | Core binding factor beta CBF | 8042548 | 3001169 | SCOP2B (2021-05-27) |
F [auth 5] | SCOP2B Superfamily | Core binding factor beta CBF | 8042548 | 3001169 | SCOP2B (2021-05-27) |
C [auth 3] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2021-05-27) |
H [auth 8] | SCOP2B Superfamily | Ubiquitin-like | 8038575 | 3000157 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | PF00559 | e8fvj11 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
G [auth 6] | PF00559 | e8fvj61 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
A [auth 0] | PF02312 | e8fvj01 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
F [auth 5] | PF02312 | e8fvj51 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
C [auth 3] | PF00240 | e8fvj31 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
H [auth 8] | PF00240 | e8fvj81 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF00240 | ECOD (1.6) |
D [auth 4] | PF03931 | e8fvj41 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
I [auth 9] | PF03931 | e8fvj91 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: PF03931 | ECOD (1.6) |
E [auth 2] | PF00888 | e8fvj21 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
J [auth 7] | PF00888 | e8fvj71 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00888 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth 3], H [auth 8] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
D [auth 4], I [auth 9] | PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain |
E [auth 2], J [auth 7] | PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat |