8FTY | pdb_00008fty

Crystal structure of the carotenoid isomerooxygenase, NinaB

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	VHL	e8ftyH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
G	VHL	e8ftyG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
F	VHL	e8ftyF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
E	VHL	e8ftyE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
D	VHL	e8ftyD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
C	VHL	e8ftyC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
B	VHL	e8ftyB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: VHL	ECOD (v295)
A	Rubrerythrin	e8ftyA01	A: alpha arrays	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: Rubrerythrin	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G, H	PF03055	Retinal pigment epithelial membrane protein (RPE65)	Retinal pigment epithelial membrane protein	-	Repeat
E, F	PF03055	Retinal pigment epithelial membrane protein (RPE65)	Retinal pigment epithelial membrane protein	-	Repeat
A, B, C, D	PF03055	Retinal pigment epithelial membrane protein (RPE65)	Retinal pigment epithelial membrane protein	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H	carotenoid isomerooxygenase	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity beta-carotene 15,15'-dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity carotenoid dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process diterpenoid metabolic process retinal metabolic process aldehyde metabolic process retinoid metabolic process olefinic compound metabolic process terpenoid metabolic process	-
E, F	carotenoid isomerooxygenase	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity beta-carotene 15,15'-dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity carotenoid dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process diterpenoid metabolic process retinal metabolic process aldehyde metabolic process retinoid metabolic process olefinic compound metabolic process terpenoid metabolic process	-
A, B, C, D	carotenoid isomerooxygenase	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity beta-carotene 15,15'-dioxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity dioxygenase activity carotenoid dioxygenase activity cation binding ion binding binding metal ion binding small molecule binding	isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process isoprenoid catabolic process lipid catabolic process catabolic process carotene catabolic process hydrocarbon catabolic process terpene metabolic process primary metabolic process hydrocarbon metabolic process carotene metabolic process metabolic process cellular process terpene catabolic process isoprenoid metabolic process lipid metabolic process diterpenoid metabolic process retinal metabolic process aldehyde metabolic process retinoid metabolic process olefinic compound metabolic process terpenoid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
G, H	IPR004294	Carotenoid oxygenase	Family
E, F	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
E, F	IPR004294	Carotenoid oxygenase	Family
A, B, C, D	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A, B, C, D	IPR004294	Carotenoid oxygenase	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
G, H	CSD	Parent Component: CYS : AA0262 : L-cysteine sulfinic acid MOD:00267
E, F	CSO	Parent Component: CYS : AA0262 , AA0205 : L-cysteine sulfinic acid MOD:00267 , L-cysteine sulfenic acid MOD:00210

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.