8FTF | pdb_00008ftf

CryoEM strucutre of 33-mer RBM3 of the Salmonella MS-ring

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_43	e8ftfA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
AA [auth BA]	Glyco_hydro_43	e8ftfBA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
B	Glyco_hydro_43	e8ftfB1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
BA [auth CA]	Glyco_hydro_43	e8ftfCA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
D	Glyco_hydro_43	e8ftfD1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
DA [auth EA]	Glyco_hydro_43	e8ftfEA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
E	Glyco_hydro_43	e8ftfE1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
EA [auth FA]	Glyco_hydro_43	e8ftfFA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
F	Glyco_hydro_43	e8ftfF1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
FA [auth GA]	Glyco_hydro_43	e8ftfGA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
G	Glyco_hydro_43	e8ftfG1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
I	Glyco_hydro_43	e8ftfI1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
J	Glyco_hydro_43	e8ftfJ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
K	Glyco_hydro_43	e8ftfK1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
L	Glyco_hydro_43	e8ftfL1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
O	Glyco_hydro_43	e8ftfO1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
P	Glyco_hydro_43	e8ftfP1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
R	Glyco_hydro_43	e8ftfR1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
V [auth W]	Glyco_hydro_43	e8ftfW1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
W [auth X]	Glyco_hydro_43	e8ftfX1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
X [auth Y]	Glyco_hydro_43	e8ftfY1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
Y [auth Z]	Glyco_hydro_43	e8ftfZ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
Z [auth AA]	Glyco_hydro_43	e8ftfAA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
U [auth V]	Glyco_hydro_43	e8ftfV1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
T	Glyco_hydro_43	e8ftfT1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
S	Glyco_hydro_43	e8ftfS1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
Q	Glyco_hydro_43	e8ftfQ1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
N	Glyco_hydro_43	e8ftfN1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
M	Glyco_hydro_43	e8ftfM1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
H	Glyco_hydro_43	e8ftfH1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
GA [auth HA]	Glyco_hydro_43	e8ftfHA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
CA [auth DA]	Glyco_hydro_43	e8ftfDA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)
C	Glyco_hydro_43	e8ftfC1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Glyco_hydro_43	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	PF08345	Flagellar M-ring protein C-terminal (YscJ_FliF_C)	Flagellar M-ring protein C-terminal	This is the RBM3/beta-collar domain found in bacterial flagellar M-ring (FliF) proteins [1] which also have the YscJ/FliF domain (Pfam:PF01514) at the N-terminal.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR006182	Flagellar M-ring, N-terminal	Domain
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR013556	Flagellar M-ring C-terminal	Domain
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
A, AA [auth BA], B, BA [auth CA], C, A, AA [auth BA], B, BA [auth CA], C, CA [auth DA], D, DA [auth EA], E, EA [auth FA], F, FA [auth GA], G, GA [auth HA], H, I, J, K, L, M, N, O, P, Q, R, S, T, U [auth V], V [auth W], W [auth X], X [auth Y], Y [auth Z], Z [auth AA]	IPR000067	Flagellar M-ring protein FliF	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.