8FLC
Human nuclear pre-60S ribosomal subunit (State K3)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth L5] | SCOP2B Superfamily | RL5-like | 8073892 | 3001709 | SCOP2B (2021-05-27) |
F [auth L6] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053155 | 3002162 | SCOP2B (2021-05-27) |
I [auth L9] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8098812 | 3000210 | SCOP2B (2021-05-27) |
J [auth LA] | SCOP2B Superfamily | Ribosomal protein L22 | 8076704 | 3001078 | SCOP2B (2021-05-27) |
K [auth LB] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095977 | 3001045 | SCOP2B (2021-05-27) |
O [auth LF] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053060 | 3002158 | SCOP2B (2021-05-27) |
P [auth LG] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072050 | 3000433 | SCOP2B (2021-05-27) |
Q [auth LH] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095967 | 3000210 | SCOP2B (2021-05-27) |
R [auth LI] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076756 | 3000334 | SCOP2B (2021-05-27) |
S [auth LJ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053050 | 3000334 | SCOP2B (2021-05-27) |
T [auth LK] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077123 | 3001045 | SCOP2B (2021-05-27) |
V [auth LM] | SCOP2B Superfamily | Ribosomal protein L29e | 8053036 | 3002157 | SCOP2B (2021-05-27) |
W [auth LN] | SCOP2B Superfamily | Translational proteins | 8078351 | 3000811 | SCOP2B (2021-05-27) |
X [auth LO] | SCOP2B Superfamily | L30e-like | 8077491 | 3001739 | SCOP2B (2021-05-27) |
AA [auth LR] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053540 | 3002203 | SCOP2B (2021-05-27) |
CA [auth LT] | SCOP2B Superfamily | Translational proteins | 8087455 | 3000811 | SCOP2B (2021-05-27) |
GA [auth LX] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101551 | 3001320 | SCOP2B (2021-05-27) |
HA [auth LY] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053567 | 3002206 | SCOP2B (2021-05-27) |
KA [auth NP] | SCOP2B Superfamily | beta-beta-alpha zinc fingers | 8036154 | 3001077 | SCOP2B (2021-05-27) |
MA [auth SA] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052831 | 3002143 | SCOP2B (2021-05-27) |
MA [auth SA] | SCOP2B Superfamily | Ribosomal protein L4 | 8052832 | 3001146 | SCOP2B (2021-05-27) |
NA [auth SB] | SCOP2B Superfamily | Translational machinery components | 8052887 | 3000571 | SCOP2B (2021-05-27) |
OA [auth SC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053100 | 3000334 | SCOP2B (2021-05-27) |
OA [auth SC] | SCOP2B Superfamily | Ribosomal protein L6e N-terminal domain | 8053099 | 3002160 | SCOP2B (2021-05-27) |
PA [auth SD] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052923 | 3001378 | SCOP2B (2021-05-27) |
PA [auth SD] | SCOP2B Superfamily | Ribosomal L30p/L7e protein N-terminal domain-lke | 8052922 | 3002152 | SCOP2B (2021-05-27) |
SA [auth SG] | SCOP2B Superfamily | Ribosomal protein L6 | 8033688 | 3000724 | SCOP2B (2021-05-27) |
TA [auth SK] | SCOP2B Superfamily | Pentein | 8098764 | 3000640 | SCOP2B (2021-05-27) |
DA [auth LU] | SCOP2B Superfamily | Ribosomal protein L36e | 8053120 | 3002161 | SCOP2B (2021-05-27) |
IA [auth LZ] | SCOP2B Superfamily | Ribosomal protein L39e | 8095603 | 3001756 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth BA] | PF00298 | e8flcBA1 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
E [auth L5] | PF00281,PF00673 | e8flcL51 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
F [auth L6] | PF01294 | e8flcL61 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
G [auth L7] | PF00572 | e8flcL71 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
H [auth L8] | PF00467,PF01929 | e8flcL81 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
I [auth L9] | PF00827 | e8flcL91 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
J [auth LA] | PF00237 | e8flcLA1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
K [auth LB] | PF17135 | e8flcLB1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
L [auth LC] | F_UNCLASSIFIED | e8flcLC1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth LC] | PF01775 | e8flcLC2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
M [auth LD] | PF01280 | e8flcLD1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
M [auth LD] | PF01280 | e8flcLD2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
N [auth LE] | PF01157 | e8flcLE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
O [auth LF] | PF01776 | e8flcLF1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
P [auth LG] | PF00238 | e8flcLG1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
Q [auth LH] | PF00276,PF03939 | e8flcLH1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
R [auth LI] | PF16906 | e8flcLI1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
S [auth LJ] | PF00467,PF01777 | e8flcLJ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
T [auth LK] | PF00828 | e8flcLK1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
U [auth LL] | PF01778 | e8flcLL1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: PF01778 | ECOD (1.6) |
V [auth LM] | PF01779 | e8flcLM1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
W [auth LN] | PF00297 | e8flcLN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
X [auth LO] | PF01248 | e8flcLO1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
Y [auth LP] | PF01198 | e8flcLP1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
Z [auth LQ] | PF01655 | e8flcLQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
AA [auth LR] | PF01199 | e8flcLR1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
BA [auth LS] | PF00831 | e8flcLS1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
CA [auth LT] | PF01247 | e8flcLT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
EA [auth LV] | PF00935 | e8flcLV1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
FA [auth LW] | PF01907 | e8flcLW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
GA [auth LX] | PF01780 | e8flcLX1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
HA [auth LY] | PF01781 | e8flcLY1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
KA [auth NP] | PF12171 | e8flcNP1 | A: few secondary structure elements | X: beta-beta-alpha zinc fingers | H: beta-beta-alpha zinc fingers (From Topology) | T: beta-beta-alpha zinc fingers | F: PF12171 | ECOD (1.6) |
LA [auth NR] | PF11176 | e8flcNR1 | A: alpha arrays | X: yeast protein YOR252W (From Topology) | H: yeast protein YOR252W (From Topology) | T: yeast protein YOR252W | F: PF11176 | ECOD (1.6) |
MA [auth SA] | PF00573 | e8flcSA2 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
MA [auth SA] | PF14374 | e8flcSA1 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
NA [auth SB] | PF14204,PF17144 | e8flcSB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
OA [auth SC] | PF01159,PF03868 | e8flcSC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159,PF03868 | ECOD (1.6) |
PA [auth SD] | PF00327,PF08079 | e8flcSD1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
QA [auth SE] | PF01248 | e8flcSE1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
RA [auth SF] | PF00181 | e8flcSF1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
RA [auth SF] | PF03947 | e8flcSF2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
SA [auth SG] | PF00347 | e8flcSG1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
TA [auth SK] | PF01912 | e8flcSK1 | A: a+b duplicates or obligate multimers | X: Pentein (From Topology) | H: Pentein (From Topology) | T: Pentein | F: PF01912 | ECOD (1.6) |
UA [auth SQ] | PF00466 | e8flcSQ1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
DA [auth LU] | PF01158 | e8flcLU1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
IA [auth LZ] | PF00832 | e8flcLZ1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth L1] | OMG | Parent Component: G |
B [auth L1] | PSU | Parent Component: U |
C [auth L3] | 1MA | Parent Component: A |
C [auth L3] | 5MC | Parent Component: C |
C [auth L3] | 6MZ | Parent Component: A |
C [auth L3] | A2M | Parent Component: A |
C [auth L3] | OMC | Parent Component: C |
C [auth L3] | OMG | Parent Component: G |
C [auth L3] | OMU | Parent Component: U |
C [auth L3] | PSU | Parent Component: U |
C [auth L3] | UR3 | Parent Component: U |
W [auth LN] | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |
LA [auth NR] | PTR | Parent Component: TYR :  AA0317 , AA0039 :  1'-methyl-L-histidine MOD:00322 , O4'-phospho-L-tyrosine MOD:00048 |