8FLC

Human nuclear pre-60S ribosomal subunit (State K3)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth L5]SCOP2B SuperfamilyRL5-like 8073892 3001709 SCOP2B (2021-05-27)
F [auth L6]SCOP2B SuperfamilyRibosomal protein L13e-like 8053155 3002162 SCOP2B (2021-05-27)
I [auth L9]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8098812 3000210 SCOP2B (2021-05-27)
J [auth LA]SCOP2B SuperfamilyRibosomal protein L22 8076704 3001078 SCOP2B (2021-05-27)
K [auth LB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095977 3001045 SCOP2B (2021-05-27)
O [auth LF]SCOP2B Superfamily60S Ribosomal protein L22e 8053060 3002158 SCOP2B (2021-05-27)
P [auth LG]SCOP2B Superfamily50S Ribosomal protein L14-like 8072050 3000433 SCOP2B (2021-05-27)
Q [auth LH]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e 8095967 3000210 SCOP2B (2021-05-27)
R [auth LI]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076756 3000334 SCOP2B (2021-05-27)
S [auth LJ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053050 3000334 SCOP2B (2021-05-27)
T [auth LK]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077123 3001045 SCOP2B (2021-05-27)
V [auth LM]SCOP2B SuperfamilyRibosomal protein L29e 8053036 3002157 SCOP2B (2021-05-27)
W [auth LN]SCOP2B SuperfamilyTranslational proteins 8078351 3000811 SCOP2B (2021-05-27)
X [auth LO]SCOP2B SuperfamilyL30e-like 8077491 3001739 SCOP2B (2021-05-27)
AA [auth LR]SCOP2B SuperfamilyRibosomal protein L34e-like 8053540 3002203 SCOP2B (2021-05-27)
CA [auth LT]SCOP2B SuperfamilyTranslational proteins 8087455 3000811 SCOP2B (2021-05-27)
GA [auth LX]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101551 3001320 SCOP2B (2021-05-27)
HA [auth LY]SCOP2B SuperfamilyRibosomal L38e protein-like 8053567 3002206 SCOP2B (2021-05-27)
KA [auth NP]SCOP2B Superfamilybeta-beta-alpha zinc fingers 8036154 3001077 SCOP2B (2021-05-27)
MA [auth SA]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052831 3002143 SCOP2B (2021-05-27)
MA [auth SA]SCOP2B SuperfamilyRibosomal protein L4 8052832 3001146 SCOP2B (2021-05-27)
NA [auth SB]SCOP2B SuperfamilyTranslational machinery components 8052887 3000571 SCOP2B (2021-05-27)
OA [auth SC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053100 3000334 SCOP2B (2021-05-27)
OA [auth SC]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain 8053099 3002160 SCOP2B (2021-05-27)
PA [auth SD]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052923 3001378 SCOP2B (2021-05-27)
PA [auth SD]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke 8052922 3002152 SCOP2B (2021-05-27)
SA [auth SG]SCOP2B SuperfamilyRibosomal protein L6 8033688 3000724 SCOP2B (2021-05-27)
TA [auth SK]SCOP2B SuperfamilyPentein 8098764 3000640 SCOP2B (2021-05-27)
DA [auth LU]SCOP2B SuperfamilyRibosomal protein L36e 8053120 3002161 SCOP2B (2021-05-27)
IA [auth LZ]SCOP2B SuperfamilyRibosomal protein L39e 8095603 3001756 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth BA]PF00298e8flcBA1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
E [auth L5]PF00281,PF00673e8flcL51 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
F [auth L6]PF01294e8flcL61 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
G [auth L7]PF00572e8flcL71 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
H [auth L8]PF00467,PF01929e8flcL81 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
I [auth L9]PF00827e8flcL91 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
J [auth LA]PF00237e8flcLA1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
K [auth LB]PF17135e8flcLB1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
L [auth LC]F_UNCLASSIFIEDe8flcLC1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
L [auth LC]PF01775e8flcLC2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
M [auth LD]PF01280e8flcLD1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
M [auth LD]PF01280e8flcLD2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
N [auth LE]PF01157e8flcLE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
O [auth LF]PF01776e8flcLF1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
P [auth LG]PF00238e8flcLG1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Q [auth LH]PF00276,PF03939e8flcLH1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
R [auth LI]PF16906e8flcLI1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
S [auth LJ]PF00467,PF01777e8flcLJ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
T [auth LK]PF00828e8flcLK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
U [auth LL]PF01778e8flcLL1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
V [auth LM]PF01779e8flcLM1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
W [auth LN]PF00297e8flcLN1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
X [auth LO]PF01248e8flcLO1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
Y [auth LP]PF01198e8flcLP1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
Z [auth LQ]PF01655e8flcLQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
AA [auth LR]PF01199e8flcLR1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
BA [auth LS]PF00831e8flcLS1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
CA [auth LT]PF01247e8flcLT1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
EA [auth LV]PF00935e8flcLV1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
FA [auth LW]PF01907e8flcLW1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
GA [auth LX]PF01780e8flcLX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
HA [auth LY]PF01781e8flcLY1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
KA [auth NP]PF12171e8flcNP1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: PF12171ECOD (1.6)
LA [auth NR]PF11176e8flcNR1 A: alpha arraysX: yeast protein YOR252W (From Topology)H: yeast protein YOR252W (From Topology)T: yeast protein YOR252WF: PF11176ECOD (1.6)
MA [auth SA]PF00573e8flcSA2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
MA [auth SA]PF14374e8flcSA1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
NA [auth SB]PF14204,PF17144e8flcSB1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
OA [auth SC]PF01159,PF03868e8flcSC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
PA [auth SD]PF00327,PF08079e8flcSD1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
QA [auth SE]PF01248e8flcSE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
RA [auth SF]PF00181e8flcSF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
RA [auth SF]PF03947e8flcSF2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
SA [auth SG]PF00347e8flcSG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
TA [auth SK]PF01912e8flcSK1 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
UA [auth SQ]PF00466e8flcSQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
DA [auth LU]PF01158e8flcLU1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
IA [auth LZ]PF00832e8flcLZ1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
E [auth L5]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
E [auth L5]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
F [auth L6]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
G [auth L7]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
H [auth L8]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
I [auth L9]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
J [auth LA]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
K [auth LB]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
L [auth LC]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
M [auth LD]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
P [auth LG]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Q [auth LH]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
R [auth LI]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
R [auth LI]PF00467KOW motif (KOW)KOW motif- Family
S [auth LJ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
S [auth LJ]PF00467KOW motif (KOW)KOW motif- Family
T [auth LK]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
U [auth LL]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
Y [auth LP]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
Z [auth LQ]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
BA [auth LS]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
CA [auth LT]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
EA [auth LV]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
FA [auth LW]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
GA [auth LX]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
HA [auth LY]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
JA [auth NK]PF10169LLP homolog (LLPH)LLP homolog- Family
KA [auth NP]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
MA [auth SA]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
MA [auth SA]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
NA [auth SB]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
NA [auth SB]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
OA [auth SC]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PA [auth SD]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
QA [auth SE]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
RA [auth SF]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
RA [auth SF]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
SA [auth SG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
TA [auth SK]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
VA [auth SR]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
VA [auth SR]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
VA [auth SR]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
WA [auth SV]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
DA [auth LU]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
IA [auth LZ]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth BA]60S ribosomal protein L12
B [auth L1]5.8S rRNA---
C [auth L3]28S rRNA---
D [auth L4]5S rRNA---
E [auth L5]60S ribosomal protein L11
F [auth L6]60S ribosomal protein L13
G [auth L7]60S ribosomal protein L13a
H [auth L8]60S ribosomal protein L14
I [auth L9]60S ribosomal protein L15
J [auth LA]60S ribosomal protein L17
K [auth LB]60S ribosomal protein L18
L [auth LC]60S ribosomal protein L18a
M [auth LD]60S ribosomal protein L19
N [auth LE]60S ribosomal protein L21
O [auth LF]60S ribosomal protein L22
P [auth LG]60S ribosomal protein L23
Q [auth LH]60S ribosomal protein L23a
R [auth LI]60S ribosomal protein L26
S [auth LJ]60S ribosomal protein L27
T [auth LK]60S ribosomal protein L27a
U [auth LL]60S ribosomal protein L28
V [auth LM]60S ribosomal protein L29
W [auth LN]60S ribosomal protein L3
X [auth LO]60S ribosomal protein L30
Y [auth LP]60S ribosomal protein L31
Z [auth LQ]60S ribosomal protein L32
AA [auth LR]60S ribosomal protein L34
BA [auth LS]60S ribosomal protein L35
CA [auth LT]60S ribosomal protein L35a
EA [auth LV]60S ribosomal protein L36a
FA [auth LW]60S ribosomal protein L37
GA [auth LX]60S ribosomal protein L37a
HA [auth LY]60S ribosomal protein L38
JA [auth NK]Protein LLP homolog
KA [auth NP]Zinc finger protein 593
LA [auth NR]Translation machinery-associated protein 16
MA [auth SA]60S ribosomal protein L4
NA [auth SB]60S ribosomal protein L5
OA [auth SC]60S ribosomal protein L6
PA [auth SD]60S ribosomal protein L7
QA [auth SE]60S ribosomal protein L7a
RA [auth SF]60S ribosomal protein L8
SA [auth SG]60S ribosomal protein L9
TA [auth SK]Eukaryotic translation initiation factor 6
UA [auth SQ]mRNA turnover protein 4 homolog
VA [auth SR]GTP-binding protein 4
WA [auth SV]Probable ribosome biogenesis protein RLP24
XA [auth VB]Leydig cell tumor 10 kDa protein homolog- - -
DA [auth LU]60S ribosomal protein L36
IA [auth LZ]60S ribosomal protein L39

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth BA]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
A [auth BA]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
A [auth BA]IPR000911Ribosomal protein uL11Family
A [auth BA]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
A [auth BA]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
A [auth BA]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
E [auth L5]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
E [auth L5]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
E [auth L5]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
E [auth L5]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
E [auth L5]IPR002132Large ribosomal subunit protein uL5Family
F [auth L6]IPR001380Large ribosomal subunit protein eL13Family
F [auth L6]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
G [auth L7]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth L7]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
G [auth L7]IPR005822Large ribosomal subunit protein uL13Family
G [auth L7]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth L8]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth L8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth L8]IPR039660Large ribosomal subunit protein eL14Family
H [auth L8]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
H [auth L8]IPR002784Large ribosomal subunit protein eL14 domainDomain
I [auth L9]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
I [auth L9]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
I [auth L9]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
I [auth L9]IPR000439Large ribosomal subunit protein eL15Family
J [auth LA]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
J [auth LA]IPR001063Large ribosomal subunit protein uL22Family
J [auth LA]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
J [auth LA]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
K [auth LB]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
K [auth LB]IPR000039Large ribosomal subunit protein eL18Family
K [auth LB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth LB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth LC]IPR028877Large ribosomal subunit protein eL20Family
L [auth LC]IPR023573Large ribosomal subunit protein eL20 domainDomain
L [auth LC]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
M [auth LD]IPR039547Large ribosomal subunit protein eL19Family
M [auth LD]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
M [auth LD]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
M [auth LD]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
M [auth LD]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
M [auth LD]IPR000196Large ribosomal subunit protein eL19 domainDomain
N [auth LE]IPR001147Large ribosomal subunit protein eL21Family
N [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth LE]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
N [auth LE]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
O [auth LF]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
O [auth LF]IPR002671Large ribosomal subunit protein eL22Family
P [auth LG]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
P [auth LG]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth LG]IPR000218Large ribosomal subunit protein uL14Family
Q [auth LH]IPR019985Large ribosomal subunit protein uL23Family
Q [auth LH]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Q [auth LH]IPR013025Large ribosomal subunit protein uL23-likeFamily
Q [auth LH]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth LH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth LH]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
R [auth LI]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth LI]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
R [auth LI]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
R [auth LI]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth LI]IPR005824KOWDomain
R [auth LI]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
S [auth LJ]IPR001141Large ribosomal subunit protein eL27Family
S [auth LJ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
S [auth LJ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth LJ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
S [auth LJ]IPR005824KOWDomain
S [auth LJ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
T [auth LK]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
T [auth LK]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
T [auth LK]IPR021131Large ribosomal subunit protein uL15/eL18Domain
T [auth LK]IPR030878Large ribosomal subunit protein uL15Family
T [auth LK]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth LL]IPR029004Ribosomal eL28/Mak16Domain
U [auth LL]IPR002672Large ribosomal subunit protein eL28Family
V [auth LM]IPR002673Large ribosomal subunit protein eL29Family
W [auth LN]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
W [auth LN]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
W [auth LN]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
W [auth LN]IPR000597Large ribosomal subunit protein uL3Family
W [auth LN]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
X [auth LO]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
X [auth LO]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
X [auth LO]IPR000231Large ribosomal subunit protein eL30Family
X [auth LO]IPR039109Large ribosomal subunit protein eL30-likeFamily
X [auth LO]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Y [auth LP]IPR000054Large ribosomal subunit protein eL31Family
Y [auth LP]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
Y [auth LP]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
Z [auth LQ]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
Z [auth LQ]IPR001515Large ribosomal subunit protein eL32Family
Z [auth LQ]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
AA [auth LR]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
AA [auth LR]IPR008195Large ribosomal subunit protein eL34Family
BA [auth LS]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth LS]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
BA [auth LS]IPR001854Large ribosomal subunit protein uL29Family
BA [auth LS]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth LT]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
CA [auth LT]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
CA [auth LT]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CA [auth LT]IPR001780Large ribosomal subunit protein eL33Family
EA [auth LV]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth LV]IPR000552Large ribosomal subunit protein eL42Family
FA [auth LW]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
FA [auth LW]IPR001569Large ribosomal subunit protein eL37Family
FA [auth LW]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
FA [auth LW]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth LX]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GA [auth LX]IPR002674Large ribosomal subunit protein eL43Family
GA [auth LX]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth LY]IPR002675Large ribosomal subunit protein eL38Family
HA [auth LY]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
JA [auth NK]IPR018784LLP homolog-likeFamily
KA [auth NP]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
KA [auth NP]IPR013087Zinc finger C2H2-typeDomain
KA [auth NP]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
KA [auth NP]IPR022755Zinc finger, double-stranded RNA bindingDomain
LA [auth NR]IPR038356Tma16 superfamilyHomologous Superfamily
LA [auth NR]IPR021346Translation machinery-associated protein 16Family
MA [auth SA]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
MA [auth SA]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
MA [auth SA]IPR002136Large ribosomal subunit protein uL4Family
MA [auth SA]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
MA [auth SA]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
NA [auth SB]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
NA [auth SB]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
OA [auth SC]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
OA [auth SC]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
OA [auth SC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth SC]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
OA [auth SC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
OA [auth SC]IPR000915Large ribosomal subunit protein eL6Family
PA [auth SD]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
PA [auth SD]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
PA [auth SD]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
PA [auth SD]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
PA [auth SD]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
PA [auth SD]IPR039699Large ribosomal subunit protein uL30Family
PA [auth SD]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
QA [auth SE]IPR001921Large ribosomal subunit protein eL8Family
QA [auth SE]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
QA [auth SE]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
QA [auth SE]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
QA [auth SE]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
RA [auth SF]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
RA [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
RA [auth SF]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth SF]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
RA [auth SF]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
RA [auth SF]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RA [auth SF]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
RA [auth SF]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
RA [auth SF]IPR002171Large ribosomal subunit protein uL2Family
SA [auth SG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
SA [auth SG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
SA [auth SG]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
SA [auth SG]IPR000702Large ribosomal subunit protein uL6-likeFamily
TA [auth SK]IPR002769Translation initiation factor IF6Family
UA [auth SQ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
UA [auth SQ]IPR001790Large ribosomal subunit protein uL10Family
UA [auth SQ]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
UA [auth SQ]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
UA [auth SQ]IPR033867Ribosome assembly factor Mrt4Family
VA [auth SR]IPR024926Nucleolar GTP-binding protein 1Family
VA [auth SR]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
VA [auth SR]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
VA [auth SR]IPR012973NOG, C-terminalDomain
VA [auth SR]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
VA [auth SR]IPR041623NOG1, N-terminal helical domainDomain
VA [auth SR]IPR005225Small GTP-binding protein domainDomain
VA [auth SR]IPR006073GTP binding domainDomain
WA [auth SV]IPR023438Large ribosomal subunit protein eL24Family
WA [auth SV]IPR011017TRASH domainDomain
WA [auth SV]IPR000988Large ribosomal subunit protein eL24-relatedFamily
WA [auth SV]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
WA [auth SV]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
XA [auth VB]IPR019034Uncharacterised protein family UPF0390Family
DA [auth LU]IPR000509Large ribosomal subunit protein eL36Family
DA [auth LU]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth LZ]IPR000077Large ribosomal subunit protein eL39Family
IA [auth LZ]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IA [auth LZ]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth L9]PharosP61313
J [auth LA]PharosP18621
K [auth LB]PharosQ07020
P [auth LG]PharosP62829
Q [auth LH]PharosP62750
R [auth LI]PharosP61254
T [auth LK]PharosP46776
U [auth LL]PharosP46779
Y [auth LP]PharosP62899
AA [auth LR]PharosP49207
BA [auth LS]PharosP42766
CA [auth LT]PharosP18077
EA [auth LV]PharosP83881
FA [auth LW]PharosP61927
GA [auth LX]PharosP61513
HA [auth LY]PharosP63173
JA [auth NK]PharosQ9BRT6
KA [auth NP]PharosO00488
LA [auth NR]PharosQ96EY4
OA [auth SC]PharosQ02878
QA [auth SE]PharosP62424
UA [auth SQ]PharosQ9UKD2
WA [auth SV]PharosQ9UHA3
XA [auth VB]PharosQ9UNZ5
DA [auth LU]PharosQ9Y3U8

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B [auth L1]OMG Parent Component: G

B [auth L1]PSU Parent Component: U

C [auth L3]1MA Parent Component: A

C [auth L3]5MC Parent Component: C

C [auth L3]6MZ Parent Component: A

C [auth L3]A2M Parent Component: A

C [auth L3]OMC Parent Component: C

C [auth L3]OMG Parent Component: G

C [auth L3]OMU Parent Component: U

C [auth L3]PSU Parent Component: U

C [auth L3]UR3 Parent Component: U

W [auth LN]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
LA [auth NR]PTR Parent Component: TYR

RESIDAA0317 , AA0039

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , O4'-phospho-L-tyrosine MOD:00048