8FL3

Human nuclear pre-60S ribosomal subunit (State I2)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth BB]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8098870 3001911 SCOP2B (2022-06-29)
G [auth L5]SCOP2B SuperfamilyRL5-like 8073892 3001709 SCOP2B (2022-06-29)
L [auth LA]SCOP2B SuperfamilyRibosomal protein L22 8076704 3001078 SCOP2B (2022-06-29)
S [auth LH]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095967 3000210 SCOP2B (2022-06-29)
T [auth LI]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076756 3000334 SCOP2B (2022-06-29)
U [auth LJ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053050 3000334 SCOP2B (2022-06-29)
BA [auth LR]SCOP2B SuperfamilyRibosomal protein L34e-like 8053540 3002203 SCOP2B (2022-06-29)
HA [auth LY]SCOP2B SuperfamilyRibosomal L38e protein-like 8053567 3002206 SCOP2B (2022-06-29)
IA [auth LZ]SCOP2B SuperfamilyRibosomal protein L39e 8095603 3001756 SCOP2B (2022-06-29)
PA [auth NP]SCOP2B Superfamilybeta-beta-alpha zinc fingers 8036154 3001077 SCOP2B (2022-06-29)
XA [auth SA]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052831 3002143 SCOP2B (2022-06-29)
XA [auth SA]SCOP2B SuperfamilyRibosomal protein L4 8052832 3001146 SCOP2B (2022-06-29)
DB [auth SG]SCOP2B SuperfamilyRibosomal protein L6 8033688 3000724 SCOP2B (2022-06-29)
GB [auth SK]SCOP2B SuperfamilyPentein 8098764 3000640 SCOP2B (2022-06-29)
HB [auth SM]SCOP2B SuperfamilyBRCT domain-like 8092279 3000159 SCOP2B (2022-06-29)
K [auth L9]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8098812 3000210 SCOP2B (2022-06-29)
M [auth LB]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095977 3001045 SCOP2B (2022-06-29)
Q [auth LF]SCOP2B Superfamily60S Ribosomal protein L22e 8053060 3002158 SCOP2B (2022-06-29)
R [auth LG]SCOP2B Superfamily50S Ribosomal protein L14-like 8072050 3000433 SCOP2B (2022-06-29)
V [auth LK]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077123 3001045 SCOP2B (2022-06-29)
X [auth LN]SCOP2B SuperfamilyTranslational proteins 8078351 3000811 SCOP2B (2022-06-29)
Y [auth LO]SCOP2B SuperfamilyL30e-like 8077491 3001739 SCOP2B (2022-06-29)
DA [auth LT]SCOP2B SuperfamilyTranslational proteins 8087455 3000811 SCOP2B (2022-06-29)
EA [auth LU]SCOP2B SuperfamilyRibosomal protein L36e 8053120 3002161 SCOP2B (2022-06-29)
GA [auth LX]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101551 3001320 SCOP2B (2022-06-29)
YA [auth SB]SCOP2B SuperfamilyTranslational machinery components 8052887 3000571 SCOP2B (2022-06-29)
ZA [auth SC]SCOP2B SuperfamilyRibosomal protein L6e, N-terminal domain 8053099 3002160 SCOP2B (2022-06-29)
ZA [auth SC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053100 3000334 SCOP2B (2022-06-29)
AB [auth SD]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052922 3002152 SCOP2B (2022-06-29)
AB [auth SD]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052923 3001378 SCOP2B (2022-06-29)
H [auth L6]SCOP2B SuperfamilyRibosomal protein L13e-like 8053155 3002162 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth BA]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
A [auth BA]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
B [auth BB]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
G [auth L5]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
G [auth L5]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
J [auth L8]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
L [auth LA]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
O [auth LD]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
S [auth LH]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
S [auth LH]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
T [auth LI]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
T [auth LI]PF00467KOW motif (KOW)KOW motif- Family
U [auth LJ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
U [auth LJ]PF00467KOW motif (KOW)KOW motif- Family
W [auth LL]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
CA [auth LS]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FA [auth LW]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
HA [auth LY]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
IA [auth LZ]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
MA [auth NJ]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
OA [auth NL]PF07767Nop53 (60S ribosomal biogenesis) (Nop53)Nop53 (60S ribosomal biogenesis)- Family
PA [auth NP]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
QA [auth NT]PF08158SDA1, HEAT repeat (SDA1_HEAT)SDA1, HEAT repeat- Repeat
QA [auth NT]PF05285SDA1, conserved domain (SDA1_dom)SDA1, conserved domainThis entry includes SDA1 protein and its homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [1]. This region i ...This entry includes SDA1 protein and its homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [1]. This region is found after the HEAT repeats found at SDA1 N-terminal (Pfam:PF08158). According to structure predictions, it consists of short alpha helices and disorder region.
Domain
WA [auth NZ]PF03879Cgr1 family (Cgr1)Cgr1 family- Coiled-coil
XA [auth SA]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
XA [auth SA]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
DB [auth SG]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
GB [auth SK]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
HB [auth SM]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
HB [auth SM]PF16589BRCT domain, a BRCA1 C-terminus domain (BRCT_2)BRCT domain, a BRCA1 C-terminus domain- Family
IB [auth SQ]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
IB [auth SQ]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
K [auth L9]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
M [auth LB]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
N [auth LC]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
R [auth LG]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth LK]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
Z [auth LP]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
AA [auth LQ]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
DA [auth LT]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
EA [auth LU]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
GA [auth LX]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
JA [auth NB]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
KA [auth NC]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
KA [auth NC]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
LA [auth NF]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
NA [auth NK]PF10169LLP homolog (LLPH)LLP homolog- Family
RA [auth NU]PF12333Rix1 complex component involved in 60S ribosome maturation (Ipi1_N)Rix1 complex component involved in 60S ribosome maturation- Family
SA [auth NV],
TA [auth NW]
PF14077Alternative WD40 repeat motif (WD40_alt)Alternative WD40 repeat motif- Family
SA [auth NV],
TA [auth NW]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
UA [auth NX],
VA [auth NY]
PF08166PELP1, middle domain (PELP1_HEAT)PELP1, middle domain- Repeat
YA [auth SB]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
YA [auth SB]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
ZA [auth SC]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
AB [auth SD]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
BB [auth SE]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
CB [auth SF]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CB [auth SF]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
EB [auth SH]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
FB [auth SI]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
FB [auth SI]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
JB [auth SR]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
JB [auth SR]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
JB [auth SR]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
KB [auth SV]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
I [auth L7]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth BA]60S ribosomal protein L12
B [auth BB]60S ribosomal protein L10a
E [auth L3]28S rRNA---
G [auth L5]60S ribosomal protein L11
J [auth L8]60S ribosomal protein L14
L [auth LA]60S ribosomal protein L17
O [auth LD]60S ribosomal protein L19
S [auth LH]60S ribosomal protein L23a
T [auth LI]60S ribosomal protein L26
U [auth LJ]60S ribosomal protein L27
W [auth LL]60S ribosomal protein L28
BA [auth LR]60S ribosomal protein L34
CA [auth LS]60S ribosomal protein L35
FA [auth LW]60S ribosomal protein L37
HA [auth LY]60S ribosomal protein L38
IA [auth LZ]60S ribosomal protein L39
MA [auth NJ]Notchless protein homolog 1-
OA [auth NL]Ribosome biogenesis protein NOP53
PA [auth NP]Zinc finger protein 593
QA [auth NT]Protein SDA1 homolog-
WA [auth NZ]Coiled-coil domain-containing protein 86 -
XA [auth SA]60S ribosomal protein L4
DB [auth SG]60S ribosomal protein L9
GB [auth SK]Eukaryotic translation initiation factor 6
HB [auth SM]Pescadillo homolog
IB [auth SQ]mRNA turnover protein 4 homolog
K [auth L9]60S ribosomal protein L15
M [auth LB]60S ribosomal protein L18
N [auth LC]60S ribosomal protein L18a
P [auth LE]60S ribosomal protein L21
Q [auth LF]60S ribosomal protein L22
R [auth LG]60S ribosomal protein L23
V [auth LK]60S ribosomal protein L27a
X [auth LN]60S ribosomal protein L3
Y [auth LO]60S ribosomal protein L30
Z [auth LP]60S ribosomal protein L31
AA [auth LQ]60S ribosomal protein L32
C [auth BD]Ribosomal biogenesis protein LAS1L
DA [auth LT]60S ribosomal protein L35a
EA [auth LU]60S ribosomal protein L36
GA [auth LX]60S ribosomal protein L37a
JA [auth NB]Guanine nucleotide-binding protein-like 3
KA [auth NC]Nucleolar GTP-binding protein 2
LA [auth NF]Ribosome biogenesis protein NSA2 homolog
D [auth L1]5.8S rRNA---
NA [auth NK]Protein LLP homolog
RA [auth NU]Testis-expressed protein 10- -
SA [auth NV],
TA [auth NW]
WD repeat-containing protein 18-
UA [auth NX],
VA [auth NY]
Proline-, glutamic acid- and leucine-rich protein 1
YA [auth SB]60S ribosomal protein L5
ZA [auth SC]60S ribosomal protein L6
AB [auth SD]60S ribosomal protein L7
BB [auth SE]60S ribosomal protein L7a
CB [auth SF]60S ribosomal protein L8
EB [auth SH]MKI67 FHA domain-interacting nucleolar phosphoprotein
FB [auth SI]60S ribosomal protein L7-like 1
F [auth L4]5S rRNA---
JB [auth SR]GTP-binding protein 4
KB [auth SV]Probable ribosome biogenesis protein RLP24
H [auth L6]60S ribosomal protein L13
I [auth L7]60S ribosomal protein L13a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth BA]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
A [auth BA]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
A [auth BA]IPR000911Ribosomal protein uL11Family
A [auth BA]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
A [auth BA]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
A [auth BA]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
B [auth BB]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
B [auth BB]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
B [auth BB]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
B [auth BB]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
B [auth BB]IPR002143Large ribosomal subunit protein uL1Family
B [auth BB]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
G [auth L5]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth L5]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth L5]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth L5]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth L5]IPR002132Large ribosomal subunit protein uL5Family
J [auth L8]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth L8]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth L8]IPR039660Large ribosomal subunit protein eL14Family
J [auth L8]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
J [auth L8]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth LA]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
L [auth LA]IPR001063Large ribosomal subunit protein uL22Family
L [auth LA]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
L [auth LA]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
O [auth LD]IPR039547Large ribosomal subunit protein eL19Family
O [auth LD]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
O [auth LD]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
O [auth LD]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
O [auth LD]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
O [auth LD]IPR000196Large ribosomal subunit protein eL19 domainDomain
S [auth LH]IPR019985Large ribosomal subunit protein uL23Family
S [auth LH]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
S [auth LH]IPR013025Large ribosomal subunit protein uL23-likeFamily
S [auth LH]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth LH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth LH]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
T [auth LI]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth LI]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
T [auth LI]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth LI]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth LI]IPR005824KOWDomain
T [auth LI]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
U [auth LJ]IPR001141Large ribosomal subunit protein eL27Family
U [auth LJ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
U [auth LJ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth LJ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
U [auth LJ]IPR005824KOWDomain
U [auth LJ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
W [auth LL]IPR029004Ribosomal eL28/Mak16Domain
W [auth LL]IPR002672Large ribosomal subunit protein eL28Family
BA [auth LR]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
BA [auth LR]IPR008195Large ribosomal subunit protein eL34Family
CA [auth LS]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
CA [auth LS]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
CA [auth LS]IPR001854Large ribosomal subunit protein uL29Family
CA [auth LS]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
FA [auth LW]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
FA [auth LW]IPR001569Large ribosomal subunit protein eL37Family
FA [auth LW]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
FA [auth LW]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth LY]IPR002675Large ribosomal subunit protein eL38Family
HA [auth LY]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
IA [auth LZ]IPR000077Large ribosomal subunit protein eL39Family
IA [auth LZ]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IA [auth LZ]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
MA [auth NJ]IPR019775WD40 repeat, conserved siteConserved Site
MA [auth NJ]IPR012972NLEDomain
MA [auth NJ]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
MA [auth NJ]IPR001632G-protein, beta subunitDomain
MA [auth NJ]IPR001680WD40 repeatRepeat
MA [auth NJ]IPR020472G-protein beta WD-40 repeatRepeat
MA [auth NJ]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
OA [auth NL]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
PA [auth NP]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
PA [auth NP]IPR051879C2H2-type Zinc Finger Maturation ProteinFamily
PA [auth NP]IPR013087Zinc finger C2H2-typeDomain
PA [auth NP]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
PA [auth NP]IPR022755Zinc finger, double-stranded RNA bindingDomain
QA [auth NT]IPR048292SDA1, C-terminal domainDomain
QA [auth NT]IPR016024Armadillo-type foldHomologous Superfamily
QA [auth NT]IPR007949SDA1, middle domainDomain
QA [auth NT]IPR027312Sda1Family
QA [auth NT]IPR012977SDA1, N-terminalDomain
WA [auth NZ]IPR026570Coiled-coil domain-containing protein 86Family
WA [auth NZ]IPR005579Cgr1-likeFamily
XA [auth SA]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
XA [auth SA]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
XA [auth SA]IPR002136Large ribosomal subunit protein uL4Family
XA [auth SA]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
XA [auth SA]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
DB [auth SG]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
DB [auth SG]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
DB [auth SG]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
DB [auth SG]IPR000702Large ribosomal subunit protein uL6-likeFamily
GB [auth SK]IPR002769Translation initiation factor IF6Family
HB [auth SM]IPR010613PescadilloFamily
HB [auth SM]IPR001357BRCT domainDomain
HB [auth SM]IPR036420BRCT domain superfamilyHomologous Superfamily
IB [auth SQ]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
IB [auth SQ]IPR001790Large ribosomal subunit protein uL10Family
IB [auth SQ]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
IB [auth SQ]IPR051742Ribosomal Assembly Factor uL10Family
IB [auth SQ]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
IB [auth SQ]IPR033867Ribosome assembly factor Mrt4Family
K [auth L9]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
K [auth L9]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth L9]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
K [auth L9]IPR000439Large ribosomal subunit protein eL15Family
M [auth LB]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
M [auth LB]IPR000039Large ribosomal subunit protein eL18Family
M [auth LB]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth LB]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
N [auth LC]IPR028877Large ribosomal subunit protein eL20Family
N [auth LC]IPR023573Large ribosomal subunit protein eL20 domainDomain
N [auth LC]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
P [auth LE]IPR001147Large ribosomal subunit protein eL21Family
P [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth LE]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
P [auth LE]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
Q [auth LF]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Q [auth LF]IPR002671Large ribosomal subunit protein eL22Family
R [auth LG]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
R [auth LG]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
R [auth LG]IPR000218Large ribosomal subunit protein uL14Family
V [auth LK]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
V [auth LK]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
V [auth LK]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth LK]IPR030878Large ribosomal subunit protein uL15Family
V [auth LK]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
X [auth LN]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
X [auth LN]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
X [auth LN]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
X [auth LN]IPR000597Large ribosomal subunit protein uL3Family
X [auth LN]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Y [auth LO]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
Y [auth LO]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth LO]IPR000231Large ribosomal subunit protein eL30Family
Y [auth LO]IPR039109Large ribosomal subunit protein eL30-likeFamily
Y [auth LO]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Z [auth LP]IPR000054Large ribosomal subunit protein eL31Family
Z [auth LP]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
Z [auth LP]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
AA [auth LQ]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
AA [auth LQ]IPR001515Large ribosomal subunit protein eL32Family
AA [auth LQ]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
C [auth BD]IPR007174Las1Family
DA [auth LT]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DA [auth LT]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
DA [auth LT]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth LT]IPR001780Large ribosomal subunit protein eL33Family
EA [auth LU]IPR000509Large ribosomal subunit protein eL36Family
EA [auth LU]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
GA [auth LX]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GA [auth LX]IPR002674Large ribosomal subunit protein eL43Family
GA [auth LX]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
JA [auth NB]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
JA [auth NB]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
JA [auth NB]IPR006073GTP binding domainDomain
JA [auth NB]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
JA [auth NB]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
KA [auth NC]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
KA [auth NC]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
KA [auth NC]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
KA [auth NC]IPR006073GTP binding domainDomain
KA [auth NC]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
KA [auth NC]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
KA [auth NC]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth NF]IPR039411Ribosomal biogenesis NSA2 familyFamily
LA [auth NF]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
NA [auth NK]IPR018784LLP homolog-likeFamily
RA [auth NU]IPR024679Pre-rRNA-processing protein Ipi1, N-terminalDomain
RA [auth NU]IPR011989Armadillo-like helicalHomologous Superfamily
RA [auth NU]IPR016024Armadillo-type foldHomologous Superfamily
RA [auth NU]IPR021133HEAT, type 2Repeat
SA [auth NV],
TA [auth NW]
IPR019775WD40 repeat, conserved siteConserved Site
SA [auth NV],
TA [auth NW]
IPR045227WD repeat-containing protein WDR18/Ipi3/RID3Family
SA [auth NV],
TA [auth NW]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
SA [auth NV],
TA [auth NW]
IPR026987WD repeat-containing protein 18, C-terminal domainDomain
SA [auth NV],
TA [auth NW]
IPR001680WD40 repeatRepeat
SA [auth NV],
TA [auth NW]
IPR020472G-protein beta WD-40 repeatRepeat
SA [auth NV],
TA [auth NW]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
UA [auth NX],
VA [auth NY]
IPR016024Armadillo-type foldHomologous Superfamily
UA [auth NX],
VA [auth NY]
IPR012583Pre-rRNA-processing protein RIX1, N-terminalDomain
UA [auth NX],
VA [auth NY]
IPR012980PELP1, middle domainDomain
UA [auth NX],
VA [auth NY]
IPR011989Armadillo-like helicalHomologous Superfamily
YA [auth SB]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
YA [auth SB]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
ZA [auth SC]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
ZA [auth SC]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
ZA [auth SC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
ZA [auth SC]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
ZA [auth SC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
ZA [auth SC]IPR000915Large ribosomal subunit protein eL6Family
AB [auth SD]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
AB [auth SD]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AB [auth SD]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
AB [auth SD]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
AB [auth SD]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
AB [auth SD]IPR039699Large ribosomal subunit protein uL30Family
AB [auth SD]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
BB [auth SE]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
BB [auth SE]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BB [auth SE]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
BB [auth SE]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
BB [auth SE]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
BB [auth SE]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
CB [auth SF]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CB [auth SF]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CB [auth SF]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CB [auth SF]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
CB [auth SF]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CB [auth SF]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CB [auth SF]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CB [auth SF]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CB [auth SF]IPR002171Large ribosomal subunit protein uL2Family
EB [auth SH]IPR021043MKI67 FHA domain-interacting nucleolar phosphoprotein, FHA Ki67 bindingDomain
EB [auth SH]IPR000504RNA recognition motif domainDomain
EB [auth SH]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EB [auth SH]IPR035979RNA-binding domain superfamilyHomologous Superfamily
FB [auth SI]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
FB [auth SI]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
FB [auth SI]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
FB [auth SI]IPR039699Large ribosomal subunit protein uL30Family
FB [auth SI]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
FB [auth SI]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
FB [auth SI]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
JB [auth SR]IPR024926Nucleolar GTP-binding protein 1Family
JB [auth SR]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
JB [auth SR]IPR005225Small GTP-binding domainDomain
JB [auth SR]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
JB [auth SR]IPR012973NOG, C-terminalDomain
JB [auth SR]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
JB [auth SR]IPR041623NOG1, N-terminal helical domainDomain
JB [auth SR]IPR006073GTP binding domainDomain
KB [auth SV]IPR023438Large ribosomal subunit protein eL24Family
KB [auth SV]IPR011017TRASH domainDomain
KB [auth SV]IPR000988Large ribosomal subunit protein eL24-relatedFamily
KB [auth SV]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
KB [auth SV]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
H [auth L6]IPR001380Large ribosomal subunit protein eL13Family
H [auth L6]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
I [auth L7]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth L7]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
I [auth L7]IPR005822Large ribosomal subunit protein uL13Family
I [auth L7]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth BA]PharosP30050
B [auth BB]PharosP62906
G [auth L5]PharosP62913
J [auth L8]PharosP50914
L [auth LA]PharosP18621
O [auth LD]PharosP84098
S [auth LH]PharosP62750
T [auth LI]PharosP61254
U [auth LJ]PharosP61353
W [auth LL]PharosP46779
BA [auth LR]PharosP49207
CA [auth LS]PharosP42766
FA [auth LW]PharosP61927
HA [auth LY]PharosP63173
MA [auth NJ]PharosQ9NVX2
OA [auth NL]PharosQ9NZM5
PA [auth NP]PharosO00488
QA [auth NT]PharosQ9NVU7
WA [auth NZ]PharosQ9H6F5
XA [auth SA]PharosP36578
DB [auth SG]PharosP32969
GB [auth SK]PharosP56537
HB [auth SM]PharosO00541
IB [auth SQ]PharosQ9UKD2
K [auth L9]PharosP61313
M [auth LB]PharosQ07020
P [auth LE]PharosP46778
Q [auth LF]PharosP35268
R [auth LG]PharosP62829
V [auth LK]PharosP46776
X [auth LN]PharosP39023
Y [auth LO]PharosP62888
Z [auth LP]PharosP62899
AA [auth LQ]PharosP62910
C [auth BD]PharosQ9Y4W2
DA [auth LT]PharosP18077
EA [auth LU]PharosQ9Y3U8
GA [auth LX]PharosP61513
JA [auth NB]PharosQ9BVP2
KA [auth NC]PharosQ13823
LA [auth NF]PharosO95478
NA [auth NK]PharosQ9BRT6
RA [auth NU]PharosQ9NXF1
SA [auth NV],
TA [auth NW]
PharosQ9BV38
UA [auth NX],
VA [auth NY]
PharosQ8IZL8
YA [auth SB]PharosP46777
ZA [auth SC]PharosQ02878
AB [auth SD]PharosP18124
BB [auth SE]PharosP62424
EB [auth SH]PharosQ9BYG3
FB [auth SI]PharosQ6DKI1
JB [auth SR]PharosQ9BZE4
KB [auth SV]PharosQ9UHA3
H [auth L6]PharosP26373
I [auth L7]PharosP40429

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth L3]1MA Parent Component: A

E [auth L3]5MC Parent Component: C

E [auth L3]6MZ Parent Component: A

E [auth L3]A2M Parent Component: A

E [auth L3]OMC Parent Component: C

E [auth L3]OMG Parent Component: G

E [auth L3]OMU Parent Component: U

E [auth L3]PSU Parent Component: U

E [auth L3]UR3 Parent Component: U

X [auth LN]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
D [auth L1]OMG Parent Component: G

RESIDAA0317

D [auth L1]PSU Parent Component: U

RESIDAA0317