Cryo-EM structure of p97:UBXD1 VIM-only state
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| L [auth A] | Glyco_hydro_43 | e8fcnA1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| J [auth B] | Glyco_hydro_43 | e8fcnB1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| H [auth C] | Glyco_hydro_43 | e8fcnC1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| F [auth D] | Glyco_hydro_43 | e8fcnD1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| D [auth E] | Glyco_hydro_43 | e8fcnE1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| B [auth F] | Glyco_hydro_43 | e8fcnF1 | A: beta barrels | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Glyco_hydro_43 | ECOD (v294.2) |
| K [auth G] | MIF4G | e8fcnG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| I [auth H] | MIF4G | e8fcnH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| G [auth I] | MIF4G | e8fcnI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| E [auth J] | MIF4G | e8fcnJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| C [auth K] | MIF4G | e8fcnK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
| A [auth L] | MIF4G | e8fcnL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: MIF4G | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
| PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
| PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR003959 | ATPase, AAA-type, core | Domain | |
| IPR005938 | AAA ATPase, CDC48 family | Family | |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
| IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
| IPR003338 | CDC48, N-terminal subdomain | Domain | |
| IPR004201 | CDC48, domain 2 | Domain | |
| IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
| IPR003593 | AAA+ ATPase domain | Domain | |
| IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
| IPR050168 | AAA ATPase domain-containing protein | Family | |
| IPR003960 | ATPase, AAA-type, conserved site | Conserved Site | |
| IPR036339 | PUB-like domain superfamily | Homologous Superfamily | |
| IPR018997 | PUB domain | Domain | |
| IPR042774 | UBXN6, PUB domain | Domain | |
| IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily | |
| IPR001012 | UBX domain | Domain |














