8EZA
NHEJ Long-range complex with PAXX
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth J] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2021-05-27) |
B [auth J] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2021-05-27) |
C [auth A] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2021-05-27) |
D [auth K] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2021-05-27) |
D [auth K] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2021-05-27) |
K [auth B] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2021-05-27) |
K [auth B] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2021-05-27) |
I [auth H] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2021-05-27) |
I [auth H] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2021-05-27) |
J [auth I] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2021-05-27) |
J [auth I] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2021-05-27) |
P [auth F] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
P [auth F] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
R [auth G] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
R [auth G] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
T [auth O] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
T [auth O] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
V [auth P] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2021-05-27) |
V [auth P] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2021-05-27) |
Q [auth X] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2021-05-27) |
U [auth Y] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth J] | PF02735,PF03730 | e8ezaJ1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
B [auth J] | PF03731 | e8ezaJ2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
C [auth A] | PF02735,PF03730 | e8ezaA2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
C [auth A] | PF03731 | e8ezaA1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
D [auth K] | PF02735,PF03730 | e8ezaK2 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
D [auth K] | PF03731 | e8ezaK1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
K [auth B] | PF02735,PF03730 | e8ezaB1 | A: beta barrels | X: SPOC domain-like | H: SPOC domain-related | T: Ku70/80 subunit middle domain | F: PF02735,PF03730 | ECOD (1.6) |
K [auth B] | PF03731 | e8ezaB2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: PF03731 | ECOD (1.6) |
I [auth H] | PF09302 | e8ezaH1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF09302 | ECOD (1.6) |
I [auth H] | F_UNCLASSIFIED | e8ezaH2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth H] | PF21928 | e8ezaH3 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21928 | ECOD (1.6) |
J [auth I] | PF09302 | e8ezaI3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF09302 | ECOD (1.6) |
J [auth I] | F_UNCLASSIFIED | e8ezaI2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth I] | PF21928 | e8ezaI1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21928 | ECOD (1.6) |
P [auth F] | PF06632 | e8ezaF3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
P [auth F] | F_UNCLASSIFIED | e8ezaF1 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
P [auth F] | PF21924 | e8ezaF2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
R [auth G] | PF06632 | e8ezaG2 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
R [auth G] | F_UNCLASSIFIED | e8ezaG3 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth G] | PF21924 | e8ezaG1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
T [auth O] | PF06632 | e8ezaO1 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
T [auth O] | F_UNCLASSIFIED | e8ezaO3 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth O] | PF21924 | e8ezaO2 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
V [auth P] | PF06632 | e8ezaP3 | A: beta barrels | X: XRCC4, N-terminal domain-like | H: XRCC4, N-terminal domain (From Topology) | T: XRCC4, N-terminal domain | F: PF06632 | ECOD (1.6) |
V [auth P] | F_UNCLASSIFIED | e8ezaP2 | A: alpha arrays | X: HTH | H: HTH | T: HTH motif inserted in other structures | F: F_UNCLASSIFIED | ECOD (1.6) |
V [auth P] | PF21924 | e8ezaP1 | A: alpha duplicates or obligate multimers | X: XRCC4 C-terminal oligomerization domain (From Topology) | H: XRCC4 C-terminal oligomerization domain (From Topology) | T: XRCC4 C-terminal oligomerization domain | F: PF21924 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth J], C [auth A] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
B [auth J], C [auth A] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
B [auth J], C [auth A] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
D [auth K], K [auth B] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
D [auth K], K [auth B] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
D [auth K], K [auth B] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
E [auth L], L [auth C] | PF08163 | DNA-dependent protein kinase catalytic subunit, CC3 (DNAPKcs_CC3) | DNA-dependent protein kinase catalytic subunit, CC3 | - | Repeat |
E [auth L], L [auth C] | PF02260 | FATC domain (FATC) | FATC domain | - | Family |
E [auth L], L [auth C] | PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family |
E [auth L], L [auth C] | PF20502 | DNA-dependent protein kinase catalytic subunit, CC1/2 (DNAPKcs_CC1-2) | DNA-dependent protein kinase catalytic subunit, CC1/2 | - | Repeat |
E [auth L], L [auth C] | PF19704 | DNA-PKcs, CC5 (DNAPKcs_CC5) | DNA-PKcs, CC5 | - | Repeat |
E [auth L], L [auth C] | PF02259 | FAT domain (FAT) | FAT domain | - | Repeat |
I [auth H], J [auth I] | PF09302 | XLF N-terminal domain (XLF) | XLF N-terminal domain | XLF (also called Cernunnos) is Xrcc4-like-factor, and interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated down-regulation of XLF in human ... | Domain |
I [auth H], J [auth I] | PF21928 | XLF protein coiled-coil region (XLF_CC) | XLF protein coiled-coil region | - | Coiled-coil |
P [auth F], R [auth G], T [auth O], V [auth P] | PF06632 | XRCC4 N-terminal domain (XRCC4) | XRCC4 N-terminal domain | This family consists of several eukaryotic DNA double-strand break repair and V(D)J recombination protein XRCC4 sequences. In the non-homologous end joining pathway of DNA double-strand break repair, the ligation step is catalysed by a complex of XRC ... | Domain |
P [auth F], R [auth G], T [auth O], V [auth P] | PF21924 | XRCC4 coiled-coil (XRCC4_CC) | XRCC4 coiled-coil | - | Coiled-coil |
Q [auth X], U [auth Y] | PF11411 | DNA ligase IV (DNA_ligase_IV) | DNA ligase IV | - | Family |
Q [auth X], U [auth Y] | PF00533 | BRCA1 C Terminus (BRCT) domain (BRCT) | BRCA1 C Terminus (BRCT) domain | - | Family |