8ESW
Structure of mitochondrial complex I from Drosophila melanogaster, Flexible-class 1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth AN] | PF05071 | e8eswAN1 | A: a+b three layers | X: Mitochondrial complex I, B17.2 subunit (From Topology) | H: Mitochondrial complex I, B17.2 subunit (From Topology) | T: Mitochondrial complex I, B17.2 subunit | F: PF05071 | ECOD (1.6) |
B [auth S6] | PF10276 | e8eswS61 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Cytochrome c oxidase Subunit F | F: PF10276 | ECOD (1.6) |
C [auth S1] | PF22117 | e8eswS12 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF22117 | ECOD (1.6) |
C [auth S1] | PF13510 | e8eswS16 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF13510 | ECOD (1.6) |
C [auth S1] | PF22151 | e8eswS14 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: PF22151 | ECOD (1.6) |
C [auth S1] | PF00384 | e8eswS13 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: PF00384 | ECOD (1.6) |
C [auth S1] | PF00384,PF09326 | e8eswS15 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: PF00384,PF09326 | ECOD (1.6) |
C [auth S1] | PF10588 | e8eswS11 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: PF10588 | ECOD (1.6) |
D [auth S3] | PF00329 | e8eswS31 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: PF00329 | ECOD (1.6) |
E [auth V2] | PF01257 | e8eswV21 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: PF01257 | ECOD (1.6) |
E [auth V2] | PF01257 | e8eswV22 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: PF01257 | ECOD (1.6) |
G [auth S8] | PF00037 | e8eswS81 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
I [auth 1] | PF00146 | e8esw11 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit 8 (Nqo8)-related | F: PF00146 | ECOD (1.6) |
J [auth 4] | PF00361,PF01059 | e8esw41 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF01059 | ECOD (1.6) |
L [auth A8] | PF06747 | e8eswA81 | A: few secondary structure elements | X: p8-MTCP1-related (From Topology) | H: p8-MTCP1-related (From Topology) | T: p8-MTCP1-related | F: PF06747 | ECOD (1.6) |
M [auth A1] | PF15879 | e8eswA11 | A: extended segments | X: Mitochondrial complex I, MWFE subunit (From Topology) | H: Mitochondrial complex I, MWFE subunit (From Topology) | T: Mitochondrial complex I, MWFE subunit | F: PF15879 | ECOD (1.6) |
N [auth AO] | PF06212 | e8eswAO1 | A: extended segments | X: Mitochondrial complex I, B16.6 subunit (From Topology) | H: Mitochondrial complex I, B16.6 subunit (From Topology) | T: Mitochondrial complex I, B16.6 subunit | F: PF06212 | ECOD (1.6) |
O [auth S5] | PF10200 | e8eswS51 | A: alpha bundles | X: cytochrome bc1 complex 11 kDa protein-like | H: CHCH domain (From Topology) | T: CHCH domain | F: PF10200 | ECOD (1.6) |
U [auth B5] | PF09781 | e8eswB51 | A: extended segments | X: Mitochondrial complex I, SGDH subunit (From Topology) | H: Mitochondrial complex I, SGDH subunit (From Topology) | T: Mitochondrial complex I, SGDH subunit | F: PF09781 | ECOD (1.6) |
AA [auth C2] | PF06374 | e8eswC21 | A: extended segments | X: Mitochondrial complex I, B14.5b subunit (From Topology) | H: Mitochondrial complex I, B14.5b subunit (From Topology) | T: Mitochondrial complex I, B14.5b subunit | F: PF06374 | ECOD (1.6) |
BA [auth B1] | PF08040 | e8eswB11 | A: extended segments | X: Mitochondrial complex I, MNLL subunit (From Topology) | H: Mitochondrial complex I, MNLL subunit (From Topology) | T: Mitochondrial complex I, MNLL subunit | F: PF08040 | ECOD (1.6) |
DA [auth A9] | PF01370 | e8eswA91 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: PF01370 | ECOD (1.6) |
HA [auth V1] | PF10589 | e8eswV11 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: PF10589 | ECOD (1.6) |
HA [auth V1] | PF22461 | e8eswV12 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: PF22461 | ECOD (1.6) |
HA [auth V1] | PF01512 | e8eswV13 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: PF01512 | ECOD (1.6) |
IA [auth 2] | PF00361,PF06444 | e8esw21 | A: alpha complex topology | X: Sodium/proton antiporter subunits-like (From Homology) | H: Sodium/proton antiporter subunits-like | T: NADH-quinone oxidoreductase subunit L (NuoL)-related | F: PF00361,PF06444 | ECOD (1.6) |
JA [auth 4L] | PF00420 | e8esw4L1 | A: alpha complex topology | X: NADH-quinone oxidoreductase subunit K (From Topology) | H: NADH-quinone oxidoreductase subunit K (From Topology) | T: NADH-quinone oxidoreductase subunit K | F: PF00420 | ECOD (1.6) |
MA [auth A5] | PF04716 | e8eswA51 | A: extended segments | X: FATC domain (From Topology) | H: FATC domain (From Topology) | T: FATC domain | F: PF04716 | ECOD (1.6) |
OA [auth A6] | PF05347 | e8eswA61 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
PA [auth AL] | PF01712 | e8eswAL1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF01712 | ECOD (1.6) |
Q [auth BL] | PF10249 | e8eswBL1 | A: alpha bundles | X: Mitochondrial complex I, PDSW subunit (From Topology) | H: Mitochondrial complex I, PDSW subunit (From Topology) | T: Mitochondrial complex I, PDSW subunit | F: PF10249 | ECOD (1.6) |
V [auth B9] | PF05347 | e8eswB91 | A: alpha bundles | X: LYR protein (From Topology) | H: LYR protein (From Topology) | T: LYR protein | F: PF05347 | ECOD (1.6) |
QA [auth AB] | PF00550 | e8eswAB1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
Z [auth AC] | PF00550 | e8eswAC1 | A: alpha bundles | X: ACP-like | H: Acyl-carrier protein (ACP) (From Topology) | T: Acyl-carrier protein (ACP) | F: PF00550 | ECOD (1.6) |
CA [auth S4] | PF04800 | e8eswS41 | A: a+b two layers | X: Putative oxidoreductase (From Topology) | H: Putative oxidoreductase (From Topology) | T: Putative oxidoreductase | F: PF04800 | ECOD (1.6) |
EA [auth B2] | PF14813 | e8eswB21 | A: extended segments | X: Mitochondrial complex I, AGGG subunit (From Topology) | H: Mitochondrial complex I, AGGG subunit (From Topology) | T: Mitochondrial complex I, AGGG subunit | F: PF14813 | ECOD (1.6) |
KA [auth 6] | PF00499 | e8esw61 | A: extended segments | X: NADH-quinone oxidoreductase subunit J (From Topology) | H: NADH-quinone oxidoreductase subunit J (From Topology) | T: NADH-quinone oxidoreductase subunit J | F: PF00499 | ECOD (1.6) |
H [auth 3] | PF00507 | e8esw31 | A: extended segments | X: NADH-quinone oxidoreductase subunit A (From Topology) | H: NADH-quinone oxidoreductase subunit A (From Topology) | T: NADH-quinone oxidoreductase subunit A | F: PF00507 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth AN] | PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12) | NADH ubiquinone oxidoreductase subunit NDUFA12 | - | Family |
B [auth S6] | PF10276 | Zinc-finger domain (zf-CHCC) | Zinc-finger domain | This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. | Domain |
C [auth S1] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family |
C [auth S1] | PF22151 | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain (NDSU1_4Fe-4S) | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain | This entry represents the 4Fe-4S domain of NADH-ubiquinone oxidoreductase NDUFS1 from mammals and NuoG from bacteria, which are part of respiratory chain complex I [1-5]. | Domain |
C [auth S1] | PF13510 | 2Fe-2S iron-sulfur cluster binding domain (Fer2_4) | 2Fe-2S iron-sulfur cluster binding domain | The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ... | Domain |
C [auth S1] | PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain |
C [auth S1] | PF09326 | NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C) | NADH-ubiquinone oxidoreductase subunit G, C-terminal | - | Family |
C [auth S1] | PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain |
D [auth S3] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family |
E [auth V2] | PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family |
F [auth S7] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
G [auth S8] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
I [auth 1] | PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family |
J [auth 4] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
J [auth 4] | PF01059 | NADH-ubiquinone oxidoreductase chain 4, amino terminus (Oxidored_q5_N) | NADH-ubiquinone oxidoreductase chain 4, amino terminus | - | Family |
K [auth 5] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
K [auth 5] | PF06455 | NADH dehydrogenase subunit 5 C-terminus (NADH5_C) | NADH dehydrogenase subunit 5 C-terminus | - | Family |
K [auth 5] | PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | - | Family |
L [auth A8] | PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain |
M [auth A1] | PF15879 | NADH-ubiquinone oxidoreductase MWFE subunit (MWFE) | NADH-ubiquinone oxidoreductase MWFE subunit | - | Family |
O [auth S5] | PF10200 | NADH:ubiquinone oxidoreductase, NDUFS5-15kDa (Ndufs5) | NADH:ubiquinone oxidoreductase, NDUFS5-15kDa | - | Family |
T [auth B7] | PF05676 | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) (NDUF_B7) | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) | - | Family |
AA [auth C2] | PF06374 | NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) (NDUF_C2) | NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) | - | Family |
DA [auth A9] | PF01370 | NAD dependent epimerase/dehydratase family (Epimerase) | NAD dependent epimerase/dehydratase family | - | Family |
HA [auth V1] | PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain |
HA [auth V1] | PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family |
HA [auth V1] | PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain |
IA [auth 2] | PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family |
IA [auth 2] | PF06444 | NADH dehydrogenase subunit 2 C-terminus (NADH_dehy_S2_C) | NADH dehydrogenase subunit 2 C-terminus | - | Family |
JA [auth 4L] | PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family |
MA [auth A5] | PF04716 | ETC complex I subunit conserved region (ETC_C1_NDUFA5) | ETC complex I subunit conserved region | - | Family |
OA [auth A6] | PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family |
PA [auth AL] | PF01712 | Deoxynucleoside kinase (dNK) | Deoxynucleoside kinase | This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the prod ... | Domain |
Q [auth BL] | PF10249 | NADH-ubiquinone oxidoreductase subunit 10 (NDUFB10) | NADH-ubiquinone oxidoreductase subunit 10 | - | Family |
R [auth B6] | PF09782 | NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit (NDUF_B6) | NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit | - | Family |
V [auth B9] | PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family |
Y [auth B3] | PF08122 | NADH-ubiquinone oxidoreductase B12 subunit family (NDUF_B12) | NADH-ubiquinone oxidoreductase B12 subunit family | - | Family |
QA [auth AB], Z [auth AC] | PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain |
CA [auth S4] | PF04800 | NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4) | NADH dehydrogenase ubiquinone Fe-S protein 4 | - | Family |
FA [auth S2] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
KA [auth 6] | PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family |
LA [auth A7] | PF07347 | NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) (CI-B14_5a) | NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) | - | Family |
H [auth 3] | PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |