8EDK | pdb_00008edk

Structure of C. elegans UNC-6 LamN and EGF domains

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e8edkA1	A: Family A G protein-coupled receptor-like	X: Family A G protein-coupled receptor-like	H: Family A G protein-coupled receptor-like	T: Cadherin	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00053	Laminin EGF domain (EGF_laminin)	Laminin EGF domain	This family is like Pfam:PF00008 but has 8 conserved cysteines instead of six.	Domain
A	PF00055	Laminin N-terminal (Domain VI) (Laminin_N)	Laminin N-terminal (Domain VI)		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Netrin unc-6	protein binding binding signaling receptor binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation netrin-activated signaling pathway cell communication cellular process signal transduction positive regulation of nervous system development multicellular organismal process positive regulation of cellular component organization cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation netrin-activated signaling pathway cell communication cellular process signal transduction positive regulation of nervous system development multicellular organismal process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development regulation of multicellular organismal process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality positive regulation of cellular process system development developmental process regulation of multicellular organismal development positive regulation of cellular component biogenesis nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly tissue development anatomical structure morphogenesis animal organ development animal organ morphogenesis axonogenesis cellular developmental process cell projection organization plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation plasma membrane bounded cell projection organization axon guidance axon development cell morphogenesis involved in neuron differentiation generation of neurons dorsal/ventral axon guidance neuron projection guidance neuron development establishment or maintenance of actin cytoskeleton polarity organelle organization establishment or maintenance of cytoskeleton polarity actin cytoskeleton organization actin filament-based process establishment or maintenance of cell polarity cytoskeleton organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization microtubule cytoskeleton organization negative regulation of biological process regulation of protein-containing complex assembly microtubule polymerization or depolymerization negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization negative regulation of supramolecular fiber organization protein polymerization negative regulation of cellular component organization negative regulation of microtubule polymerization or depolymerization protein-containing complex organization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of microtubule polymerization microtubule polymerization regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization regulation of microtubule cytoskeleton organization motor neuron axon guidance dendrite development dendrite morphogenesis male anatomical structure morphogenesis reproductive process sex differentiation developmental process involved in reproduction male sex differentiation nematode male tail tip morphogenesis interneuron axon guidance regulation of cell motility regulation of locomotion regulation of cell migration cell migration cell motility locomotion taxis regulation of axon guidance regulation of dorsal/ventral axon guidance chemotaxis regulation of cell projection organization response to external stimulus regulation of response to stimulus response to chemical regulation of neuron projection development regulation of response to external stimulus regulation of chemotaxis regulation of plasma membrane bounded cell projection organization positive regulation of cell projection organization positive regulation of anterior/posterior axon guidance anterior/posterior axon guidance positive regulation of neuron projection development positive regulation of axon guidance regulation of anterior/posterior axon guidance sensory neuron axon guidance regulation of sensory neuron axon guidance central nervous system development ventral cord development gonad development reproductive system development development of primary sexual characteristics reproductive structure development gonad morphogenesis mesodermal cell migration ameboidal-type cell migration regulation of motor neuron axon guidance	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure intracellular anatomical structure cytoplasm extracellular region axon cell projection neuron projection plasma membrane bounded cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR008211	Laminin, N-terminal	Domain
A	IPR002049	Laminin-type EGF domain	Domain
A	IPR000742	EGF-like domain	Domain
A	IPR018933	Netrin module, non-TIMP type	Domain
A	IPR001134	Netrin domain	Domain
A	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
A	IPR056863	Laminin/attractin/netrin-like, EGF domain	Domain
A	IPR050440	Laminin/Netrin Extracellular Matrix	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.