8DWW
Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth R] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
J [auth Q] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
O [auth S] | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Trypsin-like serine proteases | 8071557 | 3000114 | SCOP2B (2022-06-29) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H], G [auth V], L [auth X], Q [auth Z] | Heavy Chain | IGHV3 | - | e2 glycoprotein | SAbDab (2024-09-13) |
C [auth L], H [auth U], M [auth W], R [auth Y] | Light Chain | IGKV1 | Kappa | e2 glycoprotein | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], F [auth A], K [auth C], P [auth D] | PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |
D [auth N], I [auth M], N [auth O], S [auth P] | PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
E [auth R], J [auth Q], O [auth S], T | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Alphavirus E1 glycoprotein |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |