8DOK | pdb_00008dok

Cryo-EM structure of T/F100 SOSIP.664 HIV-1 Env trimer in complex with 8ANC195 and 10-1074


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B Superfamilygp120 core 8096334 3001390 SCOP2B (2022-06-29)
ESCOP2B Superfamilygp120 core 8096334 3001390 SCOP2B (2022-06-29)
ASCOP2B Superfamilygp120 core 8096334 3001390 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPolyketide_cyc2e8dokD1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
LPolyketide_cyc2e8dokL1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
HSulfotransfer_4e8dokH1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)
RPolyketide_cyc2e8dokR1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
PPolyketide_cyc2e8dokP1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
NSulfotransfer_4e8dokN1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)
QPolyketide_cyc2e8dokQ1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
OPolyketide_cyc2e8dokO1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
MSulfotransfer_4e8dokM1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)
KPolyketide_cyc2e8dokK1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
GPolyketide_cyc2e8dokG1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
CSulfotransfer_4e8dokC1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)
JPolyketide_cyc2e8dokJ1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
FPolyketide_cyc2e8dokF1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
BSulfotransfer_4e8dokB1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)
IPolyketide_cyc2e8dokI1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
EPolyketide_cyc2e8dokE1 A: alpha arraysX: RNase A-likeH: RNase A-likeT: RNase A-likeF: Polyketide_cyc2ECOD (v295.2)
ASulfotransfer_4e8dokA1 A: alpha arraysX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Sulfotransfer_4ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
L2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
R2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
Q2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
O2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
M2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
K2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
G2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)
C2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D, H, L
Light ChainIGKV1 Kappacrf-1_ae t/f100 hiv-1 gp41, crf-1_ae t/f100 env gp120 | crf-1_ae t/f100 hiv-1 gp41SAbDab (2026-09-11)
M, O, Q
Heavy ChainIGHV4 -crf-1_ae t/f100 env gp120SAbDab (2026-09-11)

Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage

ChainNameTargetProvenance Source
N, P, R
Zinlirvimab HIV-1 gp120 V3Therapeutic SAbDab (2026-09-11)
M, O, Q
Zinlirvimab HIV-1 gp120 V3Therapeutic SAbDab (2026-09-11)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, H, L
Light chain of 8ANC195
N, P, R
Light chain of 10-1074
M, O, Q
Heavy chain of 10-1074
C, G, K
Heavy chain of 8ANC195
B, F, J
CRF-1_AE T/F100 HIV-1 gp41
A, E, I
CRF-1_AE T/F100 Env gp120

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D, H, L
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
D, H, L
IPR050380Immune Recognition and Response ModulatorsFamily
D, H, L
IPR003597Immunoglobulin C1-setDomain
D, H, L
IPR013783Immunoglobulin-like foldHomologous Superfamily
D, H, L
IPR007110Immunoglobulin-like domainDomain
D, H, L
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
N, P, R
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
N, P, R
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
N, P, R
IPR003597Immunoglobulin C1-setDomain
N, P, R
IPR013783Immunoglobulin-like foldHomologous Superfamily
N, P, R
IPR007110Immunoglobulin-like domainDomain
N, P, R
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
M, O, Q
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
M, O, Q
IPR050380Immune Recognition and Response ModulatorsFamily
M, O, Q
IPR003597Immunoglobulin C1-setDomain
M, O, Q
IPR013783Immunoglobulin-like foldHomologous Superfamily
M, O, Q
IPR007110Immunoglobulin-like domainDomain
M, O, Q
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
C, G, K
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
C, G, K
IPR050380Immune Recognition and Response ModulatorsFamily
C, G, K
IPR003597Immunoglobulin C1-setDomain
C, G, K
IPR013783Immunoglobulin-like foldHomologous Superfamily
C, G, K
IPR007110Immunoglobulin-like domainDomain
C, G, K
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B, F, J
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
B, F, J
IPR036377Gp120 core superfamilyHomologous Superfamily
B, F, J
IPR000328Retroviral envelope protein GP41-likeDomain
B, F, J
IPR037527Envelope glycoprotein Gp160Family
A, E, I
IPR000777Human immunodeficiency virus 1, envelope glycoprotein Gp120Domain
A, E, I
IPR036377Gp120 core superfamilyHomologous Superfamily
A, E, I
IPR000328Retroviral envelope protein GP41-likeDomain
A, E, I
IPR037527Envelope glycoprotein Gp160Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
D, H, L
P01834
M, O, Q
P01857
C, G, K
P01857