8DA5
Coevolved affibody-Z domain pair LL1.c4
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02216 | e8da5A1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: PF02216 | ECOD (1.6) |
B [auth C] | PF02216 | e8da5C1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: PF02216 | ECOD (1.6) |
C [auth B] | PF02216 | e8da5B1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: PF02216 | ECOD (1.6) |
D | PF02216 | e8da5D1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: Bacterial immunoglobulin/albumin-binding domains (From Topology) | T: Bacterial immunoglobulin/albumin-binding domains | F: PF02216 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02216 | B domain (B) | B domain | This family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. | Domain | |
B [auth C] | PF02216 | B domain (B) | B domain | This family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Immunoglobulin G-binding protein A | - | |||
B [auth C] | Immunoglobulin G-binding protein A | - | ||
C [auth B] | affibody LL1.FIVM | - | - | - |
affibody LL1.FIVM | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009063 | Immunoglobulin/albumin-binding domain superfamily | Homologous Superfamily | |
IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
IPR036779 | LysM domain superfamily | Homologous Superfamily | |
IPR005038 | Octapeptide repeat | Repeat | |
IPR003132 | Protein A, Ig-binding domain | Domain | |
IPR018392 | LysM domain | Domain | |
IPR019931 | LPXTG cell wall anchor domain | Domain | |
B [auth C] | IPR009063 | Immunoglobulin/albumin-binding domain superfamily | Homologous Superfamily |
B [auth C] | IPR005877 | YSIRK Gram-positive signal peptide | Domain |
B [auth C] | IPR036779 | LysM domain superfamily | Homologous Superfamily |
B [auth C] | IPR005038 | Octapeptide repeat | Repeat |
B [auth C] | IPR003132 | Protein A, Ig-binding domain | Domain |
B [auth C] | IPR018392 | LysM domain | Domain |
B [auth C] | IPR019931 | LPXTG cell wall anchor domain | Domain |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
LAL | Parent Component: ALA | |
MLY | Parent Component: LYS :  AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 | |
B [auth C] | LAL | Parent Component: ALA :  AA0075 |
B [auth C] | MLY | Parent Component: LYS :  AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 |
C [auth B] | MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 |
LAL | Parent Component: ALA :  AA0075 , AA0075 , AA0075 | |
MLY | Parent Component: LYS :  AA0075 , AA0075 , AA0075 , AA0075 :  N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 |