Annotations: 8D5V

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PF02467	e8d5vC1	A: alpha arrays	X: 4Fe-4S binding domain in Dna2	H: 4Fe-4S protein WhiB1 (From Topology)	T: 4Fe-4S protein WhiB1	F: PF02467	ECOD (1.6)
B	PF04545	e8d5vB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF04545	ECOD (1.6)
D	PF04545	e8d5vD1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: PF04545	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF02467	Transcription factor WhiB (Whib)	Transcription factor WhiB	-	Family
B, D	PF04545	Sigma-70, region 4 (Sigma70_r4)	Sigma-70, region 4	Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [1]. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix fami ...	Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [1]. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Probable transcriptional regulator WhiB6	DNA binding binding organic cyclic compound binding nucleic acid binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding dinitrosyl-iron complex binding cation binding ion binding metal ion binding	regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process regulation of cellular process cellular biosynthetic process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process cellular process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity
B, D	RNA polymerase sigma factor SigA,DNA-directed RNA polymerase subunit beta	DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding DNA binding binding organic cyclic compound binding nucleic acid binding DNA-directed 5'-3' RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups ribonucleoside binding nucleoside binding heterocyclic compound binding carbohydrate derivative binding small molecule binding transcription regulator activity DNA-binding transcription factor activity sigma factor activity	response to stimulus response to chemical response to antibiotic cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription response to stimulus response to chemical response to antibiotic cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process response to acid chemical response to oxygen-containing compound response to abiotic stimulus response to water DNA-templated transcription initiation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex RNA polymerase complex DNA-directed RNA polymerase complex transferase complex intracellular protein-containing complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR034768	WhiB-like iron-sulfur binding domain	Domain
A, C	IPR003482	Transcription factor WhiB	Family
B, D	IPR007642	RNA polymerase Rpb2, domain 2	Domain
B, D	IPR015712	DNA-directed RNA polymerase, subunit 2	Family
B, D	IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Homologous Superfamily
B, D	IPR042107	DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily	Homologous Superfamily
B, D	IPR037034	RNA polymerase Rpb2, domain 2 superfamily	Homologous Superfamily
B, D	IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Domain
B, D	IPR007121	RNA polymerase, beta subunit, conserved site	Conserved Site
B, D	IPR007645	RNA polymerase Rpb2, domain 3	Domain
B, D	IPR014724	RNA polymerase Rpb2, OB-fold	Homologous Superfamily
B, D	IPR019462	DNA-directed RNA polymerase, beta subunit, external 1 domain	Domain
B, D	IPR010243	DNA-directed RNA polymerase beta subunit, bacterial-type	Family
B, D	IPR007644	RNA polymerase, beta subunit, protrusion	Domain
B, D	IPR007641	RNA polymerase Rpb2, domain 7	Domain
B, D	IPR007627	RNA polymerase sigma-70 region 2	Domain
B, D	IPR000943	RNA polymerase sigma-70	Domain
B, D	IPR013325	RNA polymerase sigma factor, region 2	Homologous Superfamily
B, D	IPR013324	RNA polymerase sigma factor, region 3/4-like	Homologous Superfamily
B, D	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
B, D	IPR012760	RNA polymerase sigma factor RpoD, C-terminal	Domain
B, D	IPR009042	RNA polymerase sigma-70 region 1.2	Domain
B, D	IPR007630	RNA polymerase sigma-70 region 4	Domain
B, D	IPR014284	RNA polymerase sigma-70-like domain	Domain
B, D	IPR007624	RNA polymerase sigma-70 region 3	Domain
B, D	IPR028630	RNA polymerase sigma factor RpoD	Family