8D21
Cryo-EM structure of the VRC321 clinical trial, vaccine-elicited, human antibody 1B06 in complex with a stabilized NC99 HA trimer
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | F_UNCLASSIFIED | e8d21B1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth C] | F_UNCLASSIFIED | e8d21C1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth G] | F_UNCLASSIFIED | e8d21G1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e8d21A1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth D] | F_UNCLASSIFIED | e8d21D1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth I] | F_UNCLASSIFIED | e8d21I1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth H] | F_UNCLASSIFIED | e8d21H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth E] | F_UNCLASSIFIED | e8d21E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth J] | F_UNCLASSIFIED | e8d21J1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth L] | F_UNCLASSIFIED | e8d21L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth F] | F_UNCLASSIFIED | e8d21F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth K] | F_UNCLASSIFIED | e8d21K1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth H], G [auth E], K [auth J] | Heavy Chain | IGHV3 | - | hemagglutinin ha2 chain | hemagglutinin ha1 chain | SAbDab (2024-09-13) |
D [auth L], H [auth F], L [auth K] | Light Chain | IGKV3 | Kappa | hemagglutinin ha2 chain | hemagglutinin ha1 chain | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], E [auth C], I [auth G] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
B [auth A], F [auth D], J [auth I] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], E [auth C], I [auth G] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
A [auth B], E [auth C], I [auth G] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
A [auth B], E [auth C], I [auth G] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
A [auth B], E [auth C], I [auth G] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
B [auth A], F [auth D], J [auth I] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
B [auth A], F [auth D], J [auth I] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
B [auth A], F [auth D], J [auth I] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
B [auth A], F [auth D], J [auth I] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |