8CPL
YZw2 a scaffold for cryo-EM of small proteins of interest
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | PLP-dependent transferases | 8098688 | 3000954 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | PLP-dependent transferases | 8098688 | 3000954 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | PLP-dependent transferases | 8098688 | 3000954 | SCOP2B (2021-05-27) |
C | SCOP2B Superfamily | Bacterial immunoglobulin/albumin-binding domains | 8091639 | 3001373 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | PLP-dependent transferases | 8098688 | 3000954 | SCOP2B (2021-05-27) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02216 | B domain (B) | B domain | This family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. | Domain | |
PF00202 | Aminotransferase class-III (Aminotran_3) | Aminotransferase class-III | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009063 | Immunoglobulin/albumin-binding domain superfamily | Homologous Superfamily | |
IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
IPR036779 | LysM domain superfamily | Homologous Superfamily | |
IPR005038 | Octapeptide repeat | Repeat | |
IPR003132 | Protein A, Ig-binding domain | Domain | |
IPR018392 | LysM domain | Domain | |
IPR019931 | LPXTG cell wall anchor domain | Domain | |
IPR049704 | Aminotransferases class-III pyridoxal-phosphate attachment site | Conserved Site | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR017747 | Putrescine aminotransferase | Family | |
IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | Homologous Superfamily | |
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR005814 | Aminotransferase class-III | Family |