8CL0
HIV-1 mature capsid hexamer next to pentamer (type I) from CA-IP6 CLPs bound to Nup153 peptide.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
C [auth B] | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
E [auth C] | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
G [auth D] | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
I [auth E] | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
K [auth F] | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077054 | 3001819 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF19317 | e8cl0A1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
A | PF00607 | e8cl0A2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
C [auth B] | PF19317 | e8cl0B1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
C [auth B] | PF00607 | e8cl0B2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
E [auth C] | PF19317 | e8cl0C1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
E [auth C] | PF00607 | e8cl0C2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
G [auth D] | PF19317 | e8cl0D1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
G [auth D] | PF00607 | e8cl0D2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
I [auth E] | PF19317 | e8cl0E2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
I [auth E] | PF00607 | e8cl0E1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
K [auth F] | PF19317 | e8cl0F2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
K [auth F] | PF00607 | e8cl0F1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF00607 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00607 | gag protein p24 N-terminal domain (Gag_p24) | gag protein p24 N-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain | |
PF19317 | Gag protein p24 C-terminal domain (Gag_p24_C) | Gag protein p24 C-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000071 | Immunodeficiency lentiviral matrix, N-terminal | Domain | |
IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR012344 | Matrix protein, lentiviral and alpha-retroviral, N-terminal | Homologous Superfamily | |
IPR014817 | Gag protein p6 | Domain | |
IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily | |
IPR013913 | Nucleoporin Nup153, N-terminal | Domain | |
IPR026054 | Nuclear pore complex protein | Family | |
IPR036443 | Zinc finger, RanBP2-type superfamily | Homologous Superfamily | |
IPR018892 | Retro-transposon transporting motif | Conserved Site | |
IPR001876 | Zinc finger, RanBP2-type | Domain |