8CA1

Cryo-EM structure of the ACADVL dimer from Mus musculus.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth A]	PF21343	ACAD9/ACADV, C-terminal domain (ACAD9-ACADV_C)	ACAD9/ACADV, C-terminal domain	Acyl-CoA dehydrogenases catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with reduction of enzyme-bound FAD. They consist of an N-terminal all-alpha domain, a middle open (5,8) barrel do ...	Acyl-CoA dehydrogenases catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with reduction of enzyme-bound FAD. They consist of an N-terminal all-alpha domain, a middle open (5,8) barrel domain and a four-helical bundle C-terminal domain. Members of the acyl-CoA dehydrogenase family differ in the number of C-terminal domains. This entry represents the second C-terminal domain, from ACAD9 and Very long-chain specific acyl-CoA dehydrogenase (ACADV) [1].	Domain
A [auth B], B [auth A]	PF22924	Acyl-CoA oxidase, C-alpha1 domain (ACOX_C_alpha1)	Acyl-CoA oxidase, C-alpha1 domain	This entry represents the C-alpha1 domain from acyl-CoA oxidases which has an all-alpha helical structure that a forms a four-helix bundle [1-5]. This domain includes the FAD-binding and substrate-binding sites.	Domain
A [auth B], B [auth A]	PF02771	Acyl-CoA dehydrogenase, N-terminal domain (Acyl-CoA_dh_N)	Acyl-CoA dehydrogenase, N-terminal domain	The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.	Domain
A [auth B], B [auth A]	PF02770	Acyl-CoA dehydrogenase, middle domain (Acyl-CoA_dh_M)	Acyl-CoA dehydrogenase, middle domain	Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.	Domain
A [auth B], B [auth A]	PF00441	Acyl-CoA dehydrogenase, C-terminal domain (Acyl-CoA_dh_1)	Acyl-CoA dehydrogenase, C-terminal domain	C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.	Domain
A [auth B], B [auth A]	PF08028	Acyl-CoA dehydrogenase, C-terminal domain (Acyl-CoA_dh_2)	Acyl-CoA dehydrogenase, C-terminal domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth A]	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity very-long-chain fatty acyl-CoA dehydrogenase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding nucleotide binding heterocyclic compound binding oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity very-long-chain fatty acyl-CoA dehydrogenase activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding organic cyclic compound binding anion binding nucleotide binding heterocyclic compound binding small molecule binding amide binding adenyl ribonucleotide binding fatty-acyl-CoA binding acyl-CoA binding purine ribonucleotide binding purine nucleotide binding adenyl nucleotide binding lipid binding carbohydrate derivative binding ribonucleotide binding fatty acid derivative binding sulfur compound binding long-chain fatty acyl-CoA dehydrogenase activity identical protein binding protein binding	response to stimulus response to stress response to abiotic stimulus response to cold response to temperature stimulus catabolic process oxoacid metabolic process organic acid catabolic process organic acid metabolic process cellular lipid catabolic process cellular catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process response to stimulus response to stress response to abiotic stimulus response to cold response to temperature stimulus catabolic process oxoacid metabolic process organic acid catabolic process organic acid metabolic process cellular lipid catabolic process cellular catabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process fatty acid beta-oxidation small molecule metabolic process lipid oxidation fatty acid metabolic process lipid catabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process lipid modification fatty acid catabolic process cellular lipid metabolic process metabolic process cellular process monocarboxylic acid metabolic process small molecule catabolic process lipid metabolic process negative regulation of fatty acid oxidation regulation of cellular process negative regulation of small molecule metabolic process regulation of lipid metabolic process negative regulation of biological process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of fatty acid oxidation cellular ketone metabolic process regulation of small molecule metabolic process negative regulation of cellular process regulation of biological process regulation of cellular ketone metabolic process negative regulation of fatty acid metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process regulation of fatty acid metabolic process regulation of metabolic process negative regulation of lipid metabolic process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation regulation of cholesterol metabolic process organic hydroxy compound metabolic process sterol metabolic process steroid metabolic process regulation of steroid metabolic process cholesterol metabolic process alcohol metabolic process secondary alcohol metabolic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process temperature homeostasis fatty acid beta-oxidation using acyl-CoA dehydrogenase cellular biosynthetic process lipid biosynthetic process organic acid biosynthetic process negative regulation of lipid biosynthetic process carboxylic acid biosynthetic process negative regulation of fatty acid biosynthetic process regulation of biosynthetic process monocarboxylic acid biosynthetic process small molecule biosynthetic process fatty acid biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of fatty acid biosynthetic process regulation of lipid biosynthetic process	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane nucleus membrane-enclosed lumen nucleolus intracellular organelle lumen organelle lumen intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle nucleoplasm nucleoid mitochondrial matrix mitochondrial nucleoid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth A]	IPR006091	Acyl-CoA oxidase/dehydrogenase, middle domain	Domain
A [auth B], B [auth A]	IPR036250	Acyl-CoA dehydrogenase-like, C-terminal	Homologous Superfamily
A [auth B], B [auth A]	IPR037069	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR009100	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR009075	Acyl-CoA dehydrogenase/oxidase, C-terminal	Domain
A [auth B], B [auth A]	IPR006089	Acyl-CoA dehydrogenase, conserved site	Conserved Site
A [auth B], B [auth A]	IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal	Domain
A [auth B], B [auth A]	IPR046373	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Homologous Superfamily
A [auth B], B [auth A]	IPR049448	ACAD9/ACADV-like, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.