8C0W

Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate in twin seam state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	F_UNCLASSIFIED	e8c0wC3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: double psi	F: F_UNCLASSIFIED	ECOD (1.6)
C	F_UNCLASSIFIED	e8c0wC5	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF17862	e8c0wC7	A: alpha arrays	X: Histone-like	H: Histone-related	T: AAA+ ATPase lid domain	F: PF17862	ECOD (1.6)
C	F_UNCLASSIFIED	e8c0wC8	A: a+b two layers	X: Cdc48 domain 2-like (From Topology)	H: Cdc48 domain 2-like (From Topology)	T: Cdc48 domain 2-like	F: F_UNCLASSIFIED	ECOD (1.6)
C	PF00004	e8c0wC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PF00004	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
A, C, E	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
B, D, F	PF17862	AAA+ lid domain (AAA_lid_3)	AAA+ lid domain	This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.	Domain
B, D, F	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E	Peroxisomal ATPase PEX6	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein transporter activity transporter activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular process protein unfolding protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport cellular process protein unfolding protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular macromolecule localization receptor metabolic process cellular component organization or biogenesis protein import into peroxisome matrix, receptor recycling establishment of protein localization to peroxisome intracellular protein transmembrane transport intracellular transport protein import into peroxisome matrix establishment of localization receptor recycling peroxisomal transport transmembrane transport organelle organization establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle metabolic process macromolecule metabolic process intracellular protein transport	ATPase complex protein-containing complex catalytic complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol membrane ATPase complex protein-containing complex catalytic complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol membrane microbody membrane bounding membrane of organelle peroxisomal membrane organelle membrane
B, D, F	Peroxisomal ATPase PEX1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein transporter activity transporter activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	cellular process protein unfolding protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport cellular process protein unfolding protein localization cellular localization establishment of protein localization protein localization to peroxisome nitrogen compound transport protein transmembrane import into intracellular organelle transport peroxisomal membrane transport cellular component organization localization peroxisome organization protein transmembrane transport establishment of localization in cell cellular macromolecule localization receptor metabolic process cellular component organization or biogenesis protein import into peroxisome matrix, receptor recycling establishment of protein localization to peroxisome intracellular protein transmembrane transport intracellular transport protein import into peroxisome matrix establishment of localization receptor recycling peroxisomal transport transmembrane transport organelle organization establishment of protein localization to organelle protein transport macromolecule localization protein localization to organelle metabolic process macromolecule metabolic process intracellular protein transport	ATPase complex protein-containing complex catalytic complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol membrane ATPase complex protein-containing complex catalytic complex membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle peroxisome microbody cytoplasm cellular anatomical entity intracellular membrane-bounded organelle cytosol membrane microbody membrane bounding membrane of organelle peroxisomal membrane organelle membrane
G [auth R]	unknown peptide	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
A, C, E	IPR003593	AAA+ ATPase domain	Domain
A, C, E	IPR003959	ATPase, AAA-type, core	Domain
A, C, E	IPR047533	Peroxisomal biogenesis factor 6, second ATPase domain	Domain
A, C, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B, D, F	IPR029067	CDC48 domain 2-like superfamily	Homologous Superfamily
B, D, F	IPR041569	AAA ATPase, AAA+ lid domain	Domain
B, D, F	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
B, D, F	IPR003593	AAA+ ATPase domain	Domain
B, D, F	IPR003959	ATPase, AAA-type, core	Domain
B, D, F	IPR015342	Peroxisomal ATPase PEX1, N-terminal C-lobe	Domain
B, D, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.