8BK2
X-ray structure of meningococcal factor H binding protein variant 2 in complex with a specific and bactericidal human monoclonal antibody 1B1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth H] | PF07654 | e8bk2H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D [auth H] | PF07686 | e8bk2H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth D] | PF07654 | e8bk2D2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth D] | PF07686 | e8bk2D1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H [auth F] | PF07654 | e8bk2F1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
H [auth F] | PF07686 | e8bk2F2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
A | PF08794 | e8bk2A1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF08794 | ECOD (1.6) |
A | F_UNCLASSIFIED | e8bk2A2 | A: beta barrels | X: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | H: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | T: Factor H-binding protein (fHbp) N-terminal beta-barrel domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF08794 | e8bk2B2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF08794 | ECOD (1.6) |
B | F_UNCLASSIFIED | e8bk2B1 | A: beta barrels | X: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | H: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | T: Factor H-binding protein (fHbp) N-terminal beta-barrel domain | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF08794 | e8bk2C2 | A: beta barrels | X: Outer membrane meander beta-barrels | H: OMPA-like (From Topology) | T: OMPA-like | F: PF08794 | ECOD (1.6) |
C | F_UNCLASSIFIED | e8bk2C1 | A: beta barrels | X: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | H: Factor H-binding protein (fHbp) N-terminal beta-barrel domain (From Topology) | T: Factor H-binding protein (fHbp) N-terminal beta-barrel domain | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth L] | PF07654 | e8bk2L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth L] | PF07686 | e8bk2L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
G [auth E] | PF07654 | e8bk2E1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
G [auth E] | PF07686 | e8bk2E2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I [auth G] | PF07654 | e8bk2G1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
I [auth G] | PF07686 | e8bk2G2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
D [auth H], F [auth D], H [auth F] | Heavy Chain | IGHV3 | - | factor h-binding protein | SAbDab (2024-07-12) |
E [auth L], G [auth E], I [auth G] | Light Chain | IGKV3 | Kappa | factor h-binding protein | SAbDab (2024-07-12) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08794 | Factor H binding protein, C-terminal (FHBP_C) | Factor H binding protein, C-terminal | Factor H binding protein (also known as GNA1870) is a surface exposed lipoprotein in Neisseria meningitidis that is a potent antigen and a potential candidate for a vaccine against meningococcal disease [1-4]. The structure of the C-terminal domain c ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
D [auth H], F [auth D], H [auth F] | Fab Heavy chain | - | - | - |
Factor H-binding protein | - | - | ||
E [auth L], G [auth E], I [auth G] | Fab light Chains | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011250 | Outer membrane protein/outer membrane enzyme PagP, beta-barrel | Homologous Superfamily | |
IPR014902 | Factor H binding protein-like, C-terminal | Domain | |
IPR049377 | Factor H binding protein, N-terminal | Domain | |
IPR049378 | Factor H binding protein | Family |