8BF9

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
K [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
K [auth Y]PF00467KOW motif (KOW)KOW motif- Family
L [auth C]PF10559Plug domain of Sec61p (Plug_translocon)Plug domain of Sec61pThe Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].
Domain
E [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
F [auth G]PF00584SecE/Sec61-gamma subunits of protein translocation complex (SecE)SecE/Sec61-gamma subunits of protein translocation complex- Family
G [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
H [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 5]RNA (1766)---
J [auth X]Ribosomal protein L23/L25 N-terminal domain-containing protein
K [auth Y]RL26 protein (Fragment)
L [auth C]Sec61a
M [auth b]Sec61b---
N [auth d]Large ribosomal subunit protein eL31
O [auth g]Protein transport protein Sec61 subunit gamma
P [auth h]Large ribosomal subunit protein uL29
Q [auth j]Ribosomal protein L37
R [auth k]Large ribosomal subunit protein eL38
S [auth l]60S ribosomal protein L39
B [auth 8]RNA (156-MER)---
C [auth A]Translocon-associated protein subunit alpha- -
D [auth B]Translocon-associated protein subunit beta- -
E [auth D]Translocon-associated protein subunit delta- -
F [auth G]Translocon-associated protein subunit gamma-
G [auth P]Large ribosomal subunit protein uL22
H [auth R]Ribosomal protein L19
I [auth U]RL22 protein (Fragment)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
J [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
J [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
J [auth X]IPR019985Large ribosomal subunit protein uL23Family
J [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
J [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
K [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
K [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth Y]IPR005824KOWDomain
K [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
K [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
L [auth C]IPR002208SecY/SEC61-alpha familyFamily
L [auth C]IPR030659SecY conserved siteConserved Site
L [auth C]IPR019561Translocon Sec61/SecY, plug domainDomain
L [auth C]IPR023201SecY domain superfamilyHomologous Superfamily
N [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
N [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
N [auth d]IPR000054Large ribosomal subunit protein eL31Family
O [auth g]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
O [auth g]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
O [auth g]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
P [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
P [auth h]IPR001854Large ribosomal subunit protein uL29Family
P [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Q [auth j]IPR001569Large ribosomal subunit protein eL37Family
Q [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
Q [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
R [auth k]IPR002675Large ribosomal subunit protein eL38Family
R [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
S [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
S [auth l]IPR000077Large ribosomal subunit protein eL39Family
S [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
C [auth A]IPR005595Translocon-associated protein (TRAP), alpha subunitFamily
D [auth B]IPR008856Translocon-associated protein subunit betaFamily
E [auth D]IPR008855Translocon-associatedFamily
F [auth G]IPR009779Translocon-associated protein subunit gammaFamily
G [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
G [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
G [auth P]IPR001063Large ribosomal subunit protein uL22Family
G [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
H [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
H [auth R]IPR039547Large ribosomal subunit protein eL19Family
H [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
H [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
H [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
H [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
I [auth U]IPR002671Large ribosomal subunit protein eL22Family
I [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily