8BD7

IFTB1 subcomplex of anterograde Intraflagellar transport trains (Chlamydomonas reinhardtii)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyCalponin-homology domain CH-domain8051994 3000264 SCOP2B (2021-05-27)
S [auth P]SCOP2B SuperfamilyCalponin-homology domain CH-domain8051994 3000264 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF14559e8bd7C1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF14559ECOD (1.6)
P [auth K]PF14559e8bd7K1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: PF14559ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
O [auth J]		PF21178Intraflagellar transport protein 52, C-terminal domain (Itf52_C)Intraflagellar transport protein 52, C-terminal domainThis domain is found in Intraflagellar transport protein 52 homolog from humans (Itf52) and similar eukaryotic proteins. Itf52 is part the IFT-B complex, which is involved in intraflagellar transport (IFT), the bidirectional movement of particles req ...This domain is found in Intraflagellar transport protein 52 homolog from humans (Itf52) and similar eukaryotic proteins. Itf52 is part the IFT-B complex, which is involved in intraflagellar transport (IFT), the bidirectional movement of particles required for the assembly, maintenance and functioning of primary cilia. This entry represents the C-terminal domain of Itf52, responsible for the binding to the C-terminal domain of Ift46 and essential for the interaction between the subcomplexes. It shows an all-alpha structure [1,2].
Domain
B,
O [auth J]		PF09822ABC-type uncharacterized transport system (ABC_transp_aux)ABC-type uncharacterized transport system- Family
C,
P [auth K]		PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
C,
P [auth K]		PF13174Tetratricopeptide repeat (TPR_6)Tetratricopeptide repeat- Repeat
E,
R [auth O]		PF12895Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)Anaphase-promoting complex, cyclosome, subunit 3- Repeat
H [auth I],
U [auth R]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth L],
V [auth T]		PF10234Clusterin-associated protein-1 (Cluap1)Clusterin-associated protein-1- Family
M [auth S],
Z [auth V]		PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
A,
N [auth H]		PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B,
O [auth J]		Osm-6-like protein-
C,
P [auth K]		IFT70
D,
Q [auth N]		Intraflagellar transport protein 46-
E,
R [auth O]		Intraflagellar transport protein 56
F,
S [auth P]		Intraflagellar transport protein 81
G,
T [auth Q]		Intraflagellar transport protein 74
H [auth I],
U [auth R]		Intraflagellar transport protein 80-
I [auth L],
V [auth T]		Clusterin-associated protein 1-
J [auth M],
W [auth U]		Intraflagellar transport protein 57-
K [auth W],
X [auth Y]		Intraflagellar transport particle protein IFT20-
L [auth X],
Y [auth Z]		IFT54
M [auth S],
Z [auth V]		Intraflagellar transport protein 172-
A,
N [auth H]		IFT88

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
O [auth J]		IPR029062Class I glutamine amidotransferase-likeHomologous Superfamily
B,
O [auth J]		IPR048643Intraflagellar transport protein 52, C-terminal domainDomain
B,
O [auth J]		IPR019196ABC-type uncharacterised transport systemDomain
B,
O [auth J]		IPR039975Intraflagellar transport protein 52 homologFamily
C,
P [auth K]		IPR039941Tetratricopeptide repeat protein 30Family
C,
P [auth K]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C,
P [auth K]		IPR019734Tetratricopeptide repeatRepeat
D,
Q [auth N]		IPR022088Intraflagellar transport complex B protein 46Family
E,
R [auth O]		IPR030511Tetratricopeptide repeat protein 26Family
E,
R [auth O]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
F,
S [auth P]		IPR043016IFT81, N-terminal domain superfamilyHomologous Superfamily
F,
S [auth P]		IPR041146IFT81, calponin homology domainDomain
F,
S [auth P]		IPR029600Intraflagellar transport protein 81Family
G,
T [auth Q]		IPR029602Intraflagellar transport protein 74Family
H [auth I],
U [auth R]		IPR001680WD40 repeatRepeat
H [auth I],
U [auth R]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
H [auth I],
U [auth R]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth L],
V [auth T]		IPR019366Clusterin-associated protein-1Family
J [auth M],
W [auth U]		IPR019530Intra-flagellar transport protein 57Family
K [auth W],
X [auth Y]		IPR028172Intraflagellar transport protein 20Family
L [auth X],
Y [auth Z]		IPR018799TRAF3-interacting protein 1Family
L [auth X],
Y [auth Z]		IPR042576TRAF3-interacting protein 1, N-terminal domain superfamilyHomologous Superfamily
L [auth X],
Y [auth Z]		IPR040468TRAF3-interacting protein 1, N-terminalDomain
L [auth X],
Y [auth Z]		IPR041476TRAF3-interacting protein 1, C-terminal domainDomain
M [auth S],
Z [auth V]		IPR001680WD40 repeatRepeat
M [auth S],
Z [auth V]		IPR000048IQ motif, EF-hand binding siteBinding Site
M [auth S],
Z [auth V]		IPR011044Quinoprotein amine dehydrogenase, beta chain-likeHomologous Superfamily
M [auth S],
Z [auth V]		IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
M [auth S],
Z [auth V]		IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
A,
N [auth H]		IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A,
N [auth H]		IPR019734Tetratricopeptide repeatRepeat