8B8T
Open conformation of the complex of DNA ligase I on PCNA and DNA in the presence of ATP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
B [auth E] | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
C [auth F] | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ATP-dependent DNA ligase DNA-binding domain | 8043718 | 3001985 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth E] | PCNA_N | e8b8tE1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_N | ECOD (1.6) |
B [auth E] | PCNA_C | e8b8tE2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_C | ECOD (1.6) |
C [auth F] | PCNA_N | e8b8tF2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_N | ECOD (1.6) |
C [auth F] | PCNA_C | e8b8tF1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_C | ECOD (1.6) |
D [auth G] | PCNA_N | e8b8tG2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_N | ECOD (1.6) |
D [auth G] | PCNA_C | e8b8tG1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PCNA_C | ECOD (1.6) |
A | DNA_ligase_A_N | e8b8tA2 | A: alpha bundles | X: ATP-dependent DNA ligase DNA-binding domain (From Topology) | H: ATP-dependent DNA ligase DNA-binding domain (From Topology) | T: ATP-dependent DNA ligase DNA-binding domain | F: DNA_ligase_A_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth E], C [auth F], D [auth G] | PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
B [auth E], C [auth F], D [auth G] | PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
PF04675 | DNA ligase N terminus (DNA_ligase_A_N) | DNA ligase N terminus | - | Family |