8B6L
Subtomogram average of the human Sec61-TRAP-OSTA-translocon
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00344,PF10559 | e8b6lA1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: PF00344,PF10559 | ECOD (1.6) |
E | PF03896 | e8b6lE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF03896 | ECOD (1.6) |
E | F_UNCLASSIFIED | e8b6lE2 | A: extended segments | X: Notch transmembrane helix (From Topology) | H: Notch transmembrane helix (From Topology) | T: Notch transmembrane helix | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF05753 | e8b6lF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF05753 | ECOD (1.6) |
I | PF02516 | e8b6lI1 | A: alpha bundles | X: STT3/PglB/AglB transmembrane domain (From Topology) | H: STT3/PglB/AglB transmembrane domain (From Topology) | T: STT3/PglB/AglB transmembrane domain | F: PF02516 | ECOD (1.6) |
I | PF22627 | e8b6lI2 | A: a/b three-layered sandwiches | X: STT3/PglB/AglB core domain (From Topology) | H: STT3/PglB/AglB core domain (From Topology) | T: STT3/PglB/AglB core domain | F: PF22627 | ECOD (1.6) |
K | PF10215 | e8b6lK1 | A: extended segments | X: Oligosaccharyltransferase subunit ost4p (From Topology) | H: Oligosaccharyltransferase subunit ost4p (From Topology) | T: Oligosaccharyltransferase subunit ost4p | F: PF10215 | ECOD (1.6) |
B | PF03911 | e8b6lB1 | A: extended segments | X: Sec-beta subunit (From Topology) | H: Sec-beta subunit (From Topology) | T: Sec-beta subunit | F: PF03911 | ECOD (1.6) |
C | PF00584 | e8b6lC1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: PF00584 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10559 | Plug domain of Sec61p (Plug_translocon) | Plug domain of Sec61p | The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ... | Domain | |
PF02516 | Oligosaccharyl transferase STT3, N-terminal (STT3) | Oligosaccharyl transferase STT3, N-terminal | This entry consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity [2]. In eukaryotes, OTase transfers a l ... | Domain | |
PF22627 | AglB core domain (AglB_core-like) | AglB core domain | This entry represents the C-terminal core domain of archaeal oligosaccharyltransferase AglB that transfers oligosaccharide chain from a lipid-linked oligosaccharide (LLO) donor to the asparagine residues in the N-glycosylation sequon, Asn-X-Ser/Thr ( ... | Domain | |
PF10215 | Oligosaccaryltransferase (Ost4) | Oligosaccaryltransferase | - | Family | |
PF05251 | Oligosaccharyltransferase subunit 5 (Ost5) | Oligosaccharyltransferase subunit 5 | - | Family | |
PF02109 | DAD family (DAD) | DAD family | - | Family | |
PF03345 | Oligosaccharyltransferase 48 kDa subunit beta (DDOST_48kD) | Oligosaccharyltransferase 48 kDa subunit beta | - | Family | |
PF04597 | Ribophorin I (Ribophorin_I) | Ribophorin I | - | Family | |
PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Glycosyl transferase GT-C superfamily | Oligosaccharyltransferase |