8APO | pdb_00008apo

Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
LC [auth BA]	MIF4G	e8apoBA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
HC [auth Bw]	Ribosomal_L27A, Ribosomal_L18	e8apoBw01	A: beta barrels	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v294.2)
GC [auth Bv]	RNA_pol_Rpb6	e8apoBv1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
FC [auth Bu]	MIF4G	e8apoBu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
EC [auth Bt]	RNA_pol_Rpb6	e8apoBt1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
DC [auth Bs]	RNA_pol_Rpb6	e8apoBs1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
CC [auth Br]	MIF4G	e8apoBr1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
BC [auth Bq]	MIF4G	e8apoBq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
AC [auth Bp]	MIF4G	e8apoBp1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
YB [auth Bn]	RNA_pol_Rpb6	e8apoBn1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
XB [auth Bm]	RNA_pol_Rpb6	e8apoBm1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
WB [auth Bl]	RNA_pol_Rpb6	e8apoBl1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
VB [auth Bk]	RNA_pol_Rpb6	e8apoBk1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
TB [auth Bi]	MIF4G	e8apoBi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
RB [auth Bg]	RNA_pol_Rpb6	e8apoBg1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
QB [auth Bf]	RNA_pol_Rpb6	e8apoBf1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
PB [auth Be]	MIF4G	e8apoBe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
OB [auth Bd]	MIF4G	e8apoBd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
NB [auth Bc]	Ribosomal_L27A, Ribosomal_L18	e8apoBc01	A: beta barrels	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v294.2)
MB [auth Bb]	RNA_pol_Rpb6	e8apoBb1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
LB [auth Ba]	MIF4G	e8apoBa1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
PA [auth AH]	MIF4G	e8apoAH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
OA [auth AG]	RNA_pol_Rpb6	e8apoAG1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
NA [auth AF]	MIF4G	e8apoAF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
MA [auth AE]	RNA_pol_Rpb6	e8apoAE1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
LA [auth AD]	RNA_pol_Rpb6	e8apoAD1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
JA [auth AB]	RNA_pol_Rpb6	e8apoAB1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
IA [auth AA]	RNA_pol_Rpb6	e8apoAA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
HA [auth Az]	RNA_pol_Rpb6	e8apoAz1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
EA [auth Aw]	RNA_pol_Rpb6	e8apoAw1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
DA [auth Av]	RNA_pol_Rpb6	e8apoAv1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
CA [auth Au]	MIF4G	e8apoAu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
BA [auth At]	MIF4G	e8apoAt1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
AA [auth As]	MIF4G	e8apoAs1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
Z [auth Ar]	MIF4G	e8apoAr1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
Y [auth Aq]	MIF4G	e8apoAq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
X [auth Ap]	MIF4G	e8apoAp1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
W [auth Ao]	RNA_pol_Rpb6	e8apoAo1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
V [auth An]	MIF4G	e8apoAn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
T [auth Al]	MIF4G	e8apoAl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
S [auth Ak]	MIF4G	e8apoAk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
R [auth Aj]	MIF4G	e8apoAj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
Q [auth Ai]	RNA_pol_Rpb6	e8apoAi1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
P [auth Ah]	MIF4G	e8apoAh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
O [auth Af]	RNA_pol_Rpb6	e8apoAf1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
N [auth Ae]	MIF4G	e8apoAe1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
M [auth Ad]	RNA_pol_Rpb6	e8apoAd1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)
L [auth Ac]	MIF4G	e8apoAc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
K [auth Ab]	MIF4G	e8apoAb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
J [auth Aa]	RNA_pol_Rpb6	e8apoAa1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: RNA_pol_Rpb6	ECOD (v294.2)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.