| IPR001965 | Zinc finger, PHD-type | Domain |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat | Repeat |
| IPR024763 | Vacuolar protein sorting protein 11, C-terminal | Domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
| IPR016528 | Vacuolar protein sorting-associated protein 11 | Family |
| IPR001841 | Zinc finger, RING-type | Domain |
| IPR016534 | Vacuolar protein sorting-associated protein 16 | Family |
| IPR006925 | Vps16, C-terminal | Domain |
| IPR038132 | Vps16, C-terminal domain superfamily | Homologous Superfamily |
| IPR006926 | Vps16, N-terminal | Domain |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat | Repeat |
| IPR007810 | Pep3/Vps18/deep orange, beta-propeller domain | Domain |
| IPR036045 | Sec1-like superfamily | Homologous Superfamily |
| IPR027482 | Sec1-like, domain 2 | Homologous Superfamily |
| IPR043155 | Vacuolar protein sorting-associated protein 33, domain 3b | Homologous Superfamily |
| IPR043127 | Sec1-like, domain 3a | Homologous Superfamily |
| IPR001619 | Sec1-like protein | Family |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
| IPR016902 | Vacuolar protein sorting-associated protein 41 | Family |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat | Repeat |
| IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily |
| IPR045111 | Vacuolar protein sorting-associated protein Vps41/Vps8 | Family |
| IPR001680 | WD40 repeat | Repeat |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat | Repeat |
| IPR019453 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 | Domain |
| IPR019452 | Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 | Domain |
| IPR032914 | Vam6/VPS39/TRAP1 family | Family |